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STRidER: Africa

Study statistics

Loci
21 Autosomal STRs
Allele type
Unknown
Sample size
1243
Population
Unknown

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Bibliographic information

Date published
Nov. 7, 2024
Title
Recommendations of the DNA Commission of the International Society for Forensic Genetics (ISFG) on Quality Control of Autosomal Short Tandem Repeat Allele Frequency Databasing (STRidER)
Authors
Martin Bodner, Ingo Bastisch, John M. Butler, Rolf Fimmers, Peter Gill, Leonor Gusmão, Niels Morling, Christopher Phillips, Mechthild Prinz, Peter M. Schneider, and Walther Parson
Journal
Forensic Science International: Genetics
Abstract

The statistical evaluation of autosomal Short Tandem Repeat (STR) genotypes is based on allele frequencies. These are empirically determined from sets of randomly selected human samples, compiled into STR databases that have been established in the course of population genetic studies. There is currently no agreed procedure of performing quality control of STR allele frequency databases, and the reliability and accuracy of the data are largely based on the responsibility of the individual contributing research groups. It has been demonstrated with databases of haploid markers (EMPOP for mitochondrial mtDNA, and YHRD for Y-chromosomal loci) that centralized quality control and data curation is essential to minimize error. The concepts employed for quality control involve software-aided likelihood-of-genotype, phylogenetic, and population genetic checks that allow the researchers to compare novel data to established datasets and, thus, maintain the high quality required in forensic genetics.

Here, we present STRidER (http://strider.online), a publicly available, centrally curated online allele frequency database and quality control platform for autosomal STRs. STRidER expands on the previously established ENFSI DNA WG STRbASE and applies standard concepts established for haploid and autosomal markers as well as novel tools to reduce error and increase the quality of autosomal STR data. The platform constitutes a significant improvement and innovation for the scientific community, offering autosomal STR data quality control and reliable STR genotype estimates.

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Normalized frequencies
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This check verifies that allele frequencies for each locus add up to 1 within a specified tolerance.

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Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 1243 - - - - - - - -
D10S1248 1243 - - - - - - - -
D12S391 1243 - - - - - - - -
D13S317 1243 - - - - - - - -
D16S539 1243 - - - - - - - -
D18S51 1243 - - - - - - - -
D19S433 1243 - - - - - - - -
D1S1656 1243 - - - - - - - -
D21S11 1243 - - - - - - - -
D22S1045 1243 - - - - - - - -
D2S1338 1243 - - - - - - - -
D2S441 1243 - - - - - - - -
D3S1358 1243 - - - - - - - -
D5S818 1243 - - - - - - - -
D7S820 1243 - - - - - - - -
D8S1179 1243 - - - - - - - -
FGA 1243 - - - - - - - -
SE33 1243 - - - - - - - -
TH01 1243 - - - - - - - -
TPOX 1243 - - - - - - - -
VWA 1243 - - - - - - - -

Allele frequencies

CSF1PO D10S1248 D12S391 D13S317 D16S539 D18S51 D19S433 D1S1656 D21S11 D22S1045 D2S1338 D2S441 D3S1358 D5S818 D7S820 D8S1179 FGA SE33 TH01 TPOX VWA
1 0.000804505
4.2 0.000804505
5 0.00120676
5.2 0.000804505
6 0.00724055 0.17498 0.0386163
6.2 0.000804505 0.000402253
7 0.0265487 0.000402253 0.000804505 0.00925181 0.000804505 0.00965406 0.300885 0.00804505
7.1 0.000402253
7.2 0.00160901
7.3 0.000402253
8 0.0257442 0.0792438 0.0341915 0.00201126 0.00321802 0.000402253 0.0454545 0.179807 0.00482703 0.000804505 0.218423 0.345535
8.3 0.000402253
9 0.0486726 0.00241352 0.0410298 0.181014 0.000804505 0.00120676 0.000402253 0.000804505 0.0309735 0.130732 0.00482703 0.176187 0.229686
9.1 0.000804505
9.2 0.000402253
9.3 0.000402253 0.115849
10 0.261062 0.00281577 0.041432 0.104586 0.00683829 0.00804505 0.00482703 0.0378117 0.104988 0.0808528 0.311344 0.0522928 0.00201126 0.0112631 0.079646
10.1 0.000402253
10.2 0.00402253 0.000402253 0.00120676
10.3 0.000402253 0.000402253
11 0.24457 0.0442478 0.298471 0.303701 0.00884956 0.0462591 0.0675784 0.189059 0.334272 0.000402253 0.24457 0.20716 0.0595334 0.00160901 0.000402253 0.270314 0.00362027
11.1 0.000804505
11.2 0.000402253 0.00643604
11.3 0.000402253 0.0450523
12 0.317377 0.0949316 0.343121 0.224859 0.081255 0.104988 0.07321 0.0297667 0.125905 0.00160901 0.364039 0.131134 0.128319 0.00402253 0.000402253 0.0261464 0.000402253
12.1 0.000402253
12.2 0.0225261 0.00482703
12.3 0.0100563
13 0.0563154 0.246581 0.134352 0.131134 0.0711987 0.25181 0.0937249 0.00563154 0.0374095 0.00241352 0.214401 0.0269509 0.213998 0.0112631 0.00120676 0.00603379
13.2 0.00241352 0.0450523 0.000402253 0.00603379
13.3 0.000804505 0.00281577
14 0.0104586 0.288817 0.00241352 0.0595334 0.0197104 0.10539 0.246983 0.18745 0.0623492 0.000402253 0.279163 0.0868866 0.0168946 0.00120676 0.274739 0.0289622 0.000402253 0.0985519
14.2 0.000402253 0.0607401 0.00643604
14.3 0.0168946 0.00160901
15 0.00160901 0.173371 0.0711987 0.00120676 0.000804505 0.138375 0.105792 0.181416 0.286002 0.000804505 0.0514883 0.316573 0.00160901 0.000402253 0.18745 0.041432 0.000402253 0.162912
15.2 0.00563154 0.0559131 0.000402253 0.00362027
15.3 0.0253419
16 0.11786 0.0679807 0.000402253 0.154465 0.0185036 0.1428 0.251006 0.0506838 0.00442478 0.30008 0.0623492 0.0675784 0.227675
16.1 0.00241352
16.2 0.00241352 0.0148833 0.000402253 0.00160901
16.3 0.000402253 0.0752212 0.000402253
17 0.0273532 0.149236 0.138777 0.00402253 0.0418343 0.128319 0.121883 0.213194 0.00925181 0.00120676 0.084473 0.213998
17.1 0.000804505 0.000402253
17.2 0.00201126 0.000402253 0.000804505 0.000804505 0.00120676
17.3 0.00643604 0.0518906 0.00120676
18 0.00120676 0.235318 0.104586 0.00522928 0.00884956 0.076428 0.0740145 0.00160901 0.0144811 0.119871 0.1786
18.1 0.000402253
18.2 0.000402253 0.00482703 0.00160901 0.000402253
18.3 0.00120676 0.0209171 0.000804505
19 0.135961 0.0997586 0.00120676 0.152856 0.00281577 0.000402253 0.0526951 0.105792 0.081255
19.1 0.00402253
19.2 0.000402253 0.00603379 0.000804505
19.3 0.00160901 0.00522928
20 0.0957361 0.0474658 0.000402253 0.106597 0.000804505 0.0860821 0.0720032 0.0217216
20.1 0.000402253
20.2 0.000804505 0.00482703
20.3 0.000402253
21 0.076428 0.0148833 0.0997586 0.11424 0.0418343 0.00442478
21.1 0.000804505
21.2 0.000402253 0.00321802 0.0104586
21.3 0.000804505
22 0.0502816 0.00804505 0.127514 0.179807 0.0084473 0.000402253
22.2 0.00442478 0.0104586
23 0.0530973 0.00120676 0.0981496 0.160901 0.00241352
23.1 0.000402253
23.2 0.000804505 0.0136766
23.3 0.000804505 0.000804505
24 0.0269509 0.07321 0.152454 0.000402253
24.2 0.000402253 0.00120676 0.0233307
24.3 0.00563154
25 0.0116653 0.0651649 0.0989541
25.2 0.000402253 0.000402253 0.0353982
25.3 0.000804505
26 0.00563154 0.00281577 0.0229284 0.0559131
26.1 0.000402253
26.2 0.000402253 0.0567176
27 0.00241352 0.0494771 0.00362027 0.0257442 0.000402253
27.2 0.0583266
28 0.221239 0.0124698 0.00120676
28.2 0.0474658
29 0.189863 0.00724055
29.2 0.00160901 0.000402253 0.043041
29.3 0.000804505
30 0.179807 0.00321802 0.000804505
30.2 0.0148833 0.00120676 0.0249397
31 0.0752212 0.00120676
31.2 0.0667739 0.00160901 0.0152856
32 0.0148833 0.00120676
32.1 0.000402253
32.2 0.0832663 0.00724055
33 0.00442478 0.000402253 0.00120676
33.1 0.00321802
33.2 0.031778 0.00402253
34 0.00925181 0.00160901
34.1 0.00281577
34.2 0.00442478 0.000804505
35 0.0168946 0.000402253
35.1 0.00201126
35.2 0.000804505
36 0.0100563
36.1 0.000804505
37 0.00321802 0.000804505
37.1 0.000402253
37.2 0.000402253
38 0.00120676
40.2 0.000402253
41.2 0.000402253
42.2 0.000804505
43.2 0.00120676
44.2 0.000402253

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