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STRidER: Europe

Study statistics

Loci
28 Autosomal STRs
Allele type
Length-based alleles
Sample size
7077
Population
Unknown

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Bibliographic information

Date published
Nov. 7, 2024
Title
Recommendations of the DNA Commission of the International Society for Forensic Genetics (ISFG) on Quality Control of Autosomal Short Tandem Repeat Allele Frequency Databasing (STRidER)
Authors
Martin Bodner, Ingo Bastisch, John M. Butler, Rolf Fimmers, Peter Gill, Leonor Gusmão, Niels Morling, Christopher Phillips, Mechthild Prinz, Peter M. Schneider, and Walther Parson
Journal
Forensic Science International: Genetics
Abstract

The statistical evaluation of autosomal Short Tandem Repeat (STR) genotypes is based on allele frequencies. These are empirically determined from sets of randomly selected human samples, compiled into STR databases that have been established in the course of population genetic studies. There is currently no agreed procedure of performing quality control of STR allele frequency databases, and the reliability and accuracy of the data are largely based on the responsibility of the individual contributing research groups. It has been demonstrated with databases of haploid markers (EMPOP for mitochondrial mtDNA, and YHRD for Y-chromosomal loci) that centralized quality control and data curation is essential to minimize error. The concepts employed for quality control involve software-aided likelihood-of-genotype, phylogenetic, and population genetic checks that allow the researchers to compare novel data to established datasets and, thus, maintain the high quality required in forensic genetics.

Here, we present STRidER (http://strider.online), a publicly available, centrally curated online allele frequency database and quality control platform for autosomal STRs. STRidER expands on the previously established ENFSI DNA WG STRbASE and applies standard concepts established for haploid and autosomal markers as well as novel tools to reduce error and increase the quality of autosomal STR data. The platform constitutes a significant improvement and innovation for the scientific community, offering autosomal STR data quality control and reliable STR genotype estimates.

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Normalized frequencies
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Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 2517 - - - - - - - -
D10S1248 7199 - - - - - - - -
D12S391 7200 - - - - - - - -
D13S317 2517 - - - - - - - -
D16S539 7199 - - - - - - - -
D18S51 7197 - - - - - - - -
D19S433 7199 - - - - - - - -
D1S1656 7200 - - - - - - - -
D21S11 7199 - - - - - - - -
D21S2055 1196 - - - - - - - -
D22S1045 7199 - - - - - - - -
D2S1338 7196 - - - - - - - -
D2S441 7200 - - - - - - - -
D3S1358 7198 - - - - - - - -
D3S1744 1196 - - - - - - - -
D4S2366 1196 - - - - - - - -
D5S818 2517 - - - - - - - -
D6S474 1196 - - - - - - - -
D7S820 2517 - - - - - - - -
D8S1132 1196 - - - - - - - -
D8S1179 7199 - - - - - - - -
FGA 7196 - - - - - - - -
Penta D 1501 - - - - - - - -
Penta E 1501 - - - - - - - -
SE33 5044 - - - - - - - -
TH01 7199 - - - - - - - -
TPOX 2517 - - - - - - - -
VWA 7193 - - - - - - - -

Allele frequencies

CSF1PO D10S1248 D12S391 D13S317 D16S539 D18S51 D19S433 D1S1656 D21S11 D21S2055 D22S1045 D2S1338 D2S441 D3S1358 D3S1744 D4S2366 D5S818 D6S474 D7S820 D8S1132 D8S1179 FGA Penta D Penta E SE33 TH01 TPOX VWA
1 0.0000694541 0.0000694541 0.000138889 0.000347415 0.0000694637 0.000069483
2.2 0.000333111
5 0.077948 0.000902903
6 0.000198649 0.000198649 0.000666223 0.000333111 0.233366 0.000595948
6.3 0.000198649 0.000297383
7 0.000198649 0.000397298 0.00218514 0.0198649 0.00433045 0.158228 0.165301 0.000794597
7.3 0.0000991277 0.0000694541
8 0.00317839 0.000138908 0.127334 0.0164606 0.00104167 0.00278109 0.173222 0.0138214 0.0166556 0.0116589 0.0000991277 0.108487 0.5441
8.3 0.000555633
9 0.0292014 0.000138908 0.0806516 0.112932 0.000694734 0.0000694444 0.00131944 0.327759 0.0403258 0.159118 0.0120156 0.20986 0.00999334 0.000198255 0.172871 0.104887
9.1 0.000198649
9.2 0.0000991277
9.3 0.306987
10 0.255662 0.000138908 0.0613826 0.0560495 0.00875365 0.000555633 0.00201389 0.000208362 0.187778 0.00041806 0.163462 0.0657529 0.263012 0.0762606 0.109927 0.08994 0.000198255 0.0113905 0.0661502
10.1 0.000397298
10.2 0.0000694541
10.3 0.000138889 0.0000694541
11 0.314859 0.00277816 0.322606 0.299972 0.0110463 0.00416725 0.0850694 0.135505 0.338264 0.00138927 0.0719064 0.33671 0.00041806 0.209575 0.0819558 0.148901 0.126582 0.000594766 0.251093
11.2 0.000297383
11.3 0.060625
12 0.328367 0.0293791 0.27652 0.305737 0.132625 0.0844562 0.127778 0.0129185 0.0389583 0.000625174 0.00041806 0.186873 0.379619 0.00125418 0.137664 0.13738 0.219187 0.199867 0.00436162 0.0317839 0.000208536
12.1 0.0000694541 0.000694541 0.0000991277
12.2 0.0000694541 0.00104181 0.00125418 0.000396511
12.3 0.00173611
13 0.057211 0.276913 0.095153 0.178983 0.136307 0.235033 0.0671528 0.00479233 0.0305556 0.00257016 0.00292642 0.152592 0.160111 0.249582 0.0315852 0.327268 0.200866 0.107928 0.00872324 0.000397298 0.00201585
13.2 0.0159744 0.00218081
13.3 0.000138889 0.000347222 0.0000991277
14 0.00953516 0.313516 0.000277778 0.0349623 0.02799 0.167084 0.348937 0.0847917 0.0482706 0.000208449 0.292292 0.110239 0.107441 0.0890468 0.011323 0.209448 0.00536353 0.00041806 0.216211 0.0729514 0.0433045 0.0290444 0.000198649 0.103642
14.1 0.00041806
14.2 0.0228504 0.00208168
14.3 0.00319444 0.0000694444
15 0.00158919 0.20607 0.04125 0.000595948 0.00159744 0.141865 0.162106 0.135903 0.363523 0.000555864 0.0429167 0.259725 0.0610368 0.00710702 0.0011919 0.120819 0.105987 0.0146569 0.0502998 0.0413362 0.101349
15.2 0.0407001 0.0010904
15.3 0.063125 0.0000694444 0.000693894
16 0.134394 0.0281944 0.0000694541 0.136307 0.0522295 0.120069 0.337061 0.0443302 0.00381944 0.249653 0.110368 0.307692 0.0117057 0.0254897 0.00069483 0.00166556 0.0426382 0.0475813 0.20652
16.1 0.000138889 0.0647993 0.000297383
16.2 0.0000694734 0.021114 0.000594766
16.3 0.000138889 0.0515278 0.00188343
17 0.0338241 0.104653 0.109143 0.00409779 0.0486111 0.0880678 0.223874 0.0000694444 0.207627 0.311873 0.102843 0.116221 0.00298653 0.00118121 0.0409727 0.0692902 0.277075
17.1 0.000277778 0.0204849 0.0000694637 0.0000991277
17.2 0.00361161 0.000495638
17.3 0.0191667 0.13625 0.0010904
18 0.00236144 0.187083 0.0710713 0.00034727 0.00458333 0.00777886 0.0822679 0.154904 0.182692 0.00710702 0.214047 0.000625087 0.014244 0.0186542 0.0769231 0.213124
18.1 0.0204849 0.0000991277
18.2 0.00187526 0.000069483 0.000793021
18.3 0.0195139 0.0577778 0.0010904
19 0.00034727 0.112778 0.0441851 0.0000694444 0.00152799 0.108741 0.0120172 0.161789 0.00041806 0.154682 0.0706643 0.0106596 0.0721649 0.080773
19.1 0.238294
19.2 0.0000694541 0.000138966 0.0028747
19.3 0.0104861 0.010625 0.0000991277
20 0.118125 0.0220231 0.00034727 0.142579 0.00111142 0.0510033 0.141722 0.139105 0.00732845 0.0479778 0.0141109
20.1 0.0384615
20.2 0.0000694444 0.000555864 0.00892149
20.3 0.00180556 0.000694444
21 0.113194 0.0109768 0.0299472 0.00877926 0.119565 0.179683 0.00199867 0.0291435 0.0011817
21.1 0.00585284 0.00083612
21.2 0.00229294 0.0149683
21.3 0.000416667 0.0000991277
22 0.106458 0.00576629 0.00041806 0.028488 0.00125418 0.117057 0.181976 0.00166556 0.00862411
22.1 0.0000694734 0.00041806
22.2 0.00965814 0.028747
22.3 0.000208333
23 0.0877778 0.00111157 0.00794314 0.10624 0.0873746 0.148902 0.00267645
23.2 0.00041806 0.00507226 0.038065
24 0.0313889 0.000764207 0.00710702 0.106656 0.0263378 0.133685 0.000396511
24.1 0.000069483
24.2 0.000555633 0.000833797 0.0304322
25 0.0132639 0.000138947 0.00034727 0.137542 0.103321 0.00877926 0.0774041 0.000297383
25.2 0.000486179 0.000208449 0.038858
26 0.00284722 0.00187526 0.142977 0.0199416 0.00083612 0.0280712 0.000396511
26.2 0.000138908 0.000138966 0.0526368
27 0.000763889 0.0300042 0.0271739 0.00222346 0.00403002 0.0000991277
27.2 0.0735527
27.3 0.00041806 0.000198255
28 0.155022 0.00585284 0.000277932 0.000972763 0.000396511
28.1 0.0000694541
28.2 0.000138908 0.0782117
28.3 0.0000694541 0.00041806 0.0000991277
29 0.214335 0.027592 0.000208449 0.000594766
29.2 0.000833449 0.0641356
29.3 0.000208362 0.000198255
30 0.24052 0.0259197 0.0000991277
30.1 0.0000991277
30.2 0.0432699 0.052042
31 0.0714683 0.0334448 0.000396511
31.2 0.0926518 0.0301348
31.3 0.0000694541
32 0.0134046 0.0359532 0.000693894
32.2 0.0976525 0.0121927
33 0.00131963 0.0522575 0.00436162
33.1 0.0000694541
33.2 0.0313238 0.000069483 0.00475813
34 0.000208362 0.062709 0.00307296
34.2 0.00354216 0.00237906
35 0.000138908 0.0321906 0.00138779
35.2 0.000277816 0.000198255
36 0.00919732 0.000793021
36.2 0.0000991277
37 0.00125418 0.000198255
38 0.00083612
99 0.000138889

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