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STRidER: Germany

Study statistics

Loci
23 Autosomal STRs
Allele type
Length-based alleles
Sample size
662
Population
Unknown

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Bibliographic information

Date published
Nov. 7, 2024
Title
Recommendations of the DNA Commission of the International Society for Forensic Genetics (ISFG) on Quality Control of Autosomal Short Tandem Repeat Allele Frequency Databasing (STRidER)
Authors
Martin Bodner, Ingo Bastisch, John M. Butler, Rolf Fimmers, Peter Gill, Leonor Gusmão, Niels Morling, Christopher Phillips, Mechthild Prinz, Peter M. Schneider, and Walther Parson
Journal
Forensic Science International: Genetics
Abstract

The statistical evaluation of autosomal Short Tandem Repeat (STR) genotypes is based on allele frequencies. These are empirically determined from sets of randomly selected human samples, compiled into STR databases that have been established in the course of population genetic studies. There is currently no agreed procedure of performing quality control of STR allele frequency databases, and the reliability and accuracy of the data are largely based on the responsibility of the individual contributing research groups. It has been demonstrated with databases of haploid markers (EMPOP for mitochondrial mtDNA, and YHRD for Y-chromosomal loci) that centralized quality control and data curation is essential to minimize error. The concepts employed for quality control involve software-aided likelihood-of-genotype, phylogenetic, and population genetic checks that allow the researchers to compare novel data to established datasets and, thus, maintain the high quality required in forensic genetics.

Here, we present STRidER (http://strider.online), a publicly available, centrally curated online allele frequency database and quality control platform for autosomal STRs. STRidER expands on the previously established ENFSI DNA WG STRbASE and applies standard concepts established for haploid and autosomal markers as well as novel tools to reduce error and increase the quality of autosomal STR data. The platform constitutes a significant improvement and innovation for the scientific community, offering autosomal STR data quality control and reliable STR genotype estimates.

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Normalized frequencies
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Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 619 - - - - - - - -
D10S1248 785 - - - - - - - -
D12S391 785 - - - - - - - -
D13S317 619 - - - - - - - -
D16S539 785 - - - - - - - -
D18S51 785 - - - - - - - -
D19S433 785 - - - - - - - -
D1S1656 785 - - - - - - - -
D21S11 785 - - - - - - - -
D22S1045 785 - - - - - - - -
D2S1338 785 - - - - - - - -
D2S441 785 - - - - - - - -
D3S1358 785 - - - - - - - -
D5S818 619 - - - - - - - -
D7S820 619 - - - - - - - -
D8S1179 785 - - - - - - - -
FGA 785 - - - - - - - -
Penta D 303 - - - - - - - -
Penta E 303 - - - - - - - -
SE33 785 - - - - - - - -
TH01 785 - - - - - - - -
TPOX 619 - - - - - - - -
VWA 785 - - - - - - - -

Allele frequencies

CSF1PO D10S1248 D12S391 D13S317 D16S539 D18S51 D19S433 D1S1656 D21S11 D22S1045 D2S1338 D2S441 D3S1358 D5S818 D7S820 D8S1179 FGA Penta D Penta E SE33 TH01 TPOX VWA
5 0.0544554 0.00127389
6 0.000807754 0.235032
7 0.000807754 0.000807754 0.00323102 0.0201939 0.0049505 0.173267 0.159873
8 0.00242326 0.00127389 0.126817 0.0203822 0.00254777 0.00403877 0.167205 0.0197452 0.019802 0.0115512 0.115287 0.554927
8.3 0.000636943
9 0.0242326 0.0799677 0.119745 0.000636943 0.0387722 0.155897 0.010828 0.216172 0.00825083 0.000636943 0.165605 0.0945073
9.3 0.309554
10 0.245557 0.0613893 0.0464968 0.0127389 0.00127389 0.191083 0.0638126 0.265751 0.0878981 0.140264 0.113861 0.0127389 0.0565428
11 0.301292 0.00636943 0.324717 0.287261 0.0121019 0.00382166 0.105096 0.136306 0.363057 0.00254777 0.339257 0.226979 0.066242 0.148515 0.118812 0.000636943 0.260905
11.2 0.000636943
11.3 0.0420382
12 0.347334 0.0286624 0.279483 0.307643 0.134395 0.0636943 0.108917 0.0127389 0.0414013 0.000636943 0.376414 0.126817 0.150318 0.193069 0.181518 0.00636943 0.0331179
12.1 0.00127389
12.2 0.00191083 0.000636943
12.3 0.00254777
13 0.0605816 0.292357 0.095315 0.188535 0.146497 0.227389 0.0738854 0.00764331 0.0254777 0.00573248 0.160743 0.0298869 0.33758 0.19967 0.108911 0.0101911 0.000636943
13.2 0.0127389 0.00191083
14 0.0161551 0.314013 0.0315024 0.0280255 0.141401 0.36051 0.0878981 0.0414013 0.284076 0.119108 0.0129241 0.00726979 0.197452 0.0643564 0.0429043 0.033758 0.0936306
14.2 0.0235669
14.3 0.00318471 0.000636943
15 0.000807754 0.202548 0.0401274 0.00191083 0.146497 0.163057 0.13949 0.381529 0.000636943 0.044586 0.264331 0.000807754 0.0993631 0.0132013 0.049505 0.0369427 0.108917
15.2 0.0452229 0.000636943
15.3 0.0656051 0.00127389
16 0.120382 0.0292994 0.140127 0.0643312 0.107643 0.335669 0.043949 0.00191083 0.240127 0.0261146 0.0462046 0.0458599 0.210828
16.2 0.0216561
16.3 0.000636943 0.0522293 0.000636943
17 0.033121 0.0974522 0.120382 0.00509554 0.0503185 0.0770701 0.204459 0.199363 0.0044586 0.00254777 0.0478548 0.0726115 0.271338
17.1 0.000636943 0.000636943
17.2 0.00318471
17.3 0.0146497 0.128662 0.00127389
18 0.00127389 0.189809 0.0694268 0.000636943 0.00382166 0.00573248 0.0917197 0.15414 0.0121019 0.0214521 0.0598726 0.206369
18.2 0.00127389 0.000636943
18.3 0.0178344 0.0585987 0.00127389
19 0.103822 0.0407643 0.00127389 0.103185 0.0127389 0.0636943 0.00990099 0.0713376 0.0955414
19.2 0.000636943 0.0044586
19.3 0.00764331 0.011465
20 0.130573 0.0197452 0.000636943 0.144586 0.000636943 0.152866 0.00990099 0.0458599 0.0121019
20.2 0.00127389 0.0089172
20.3 0.00382166 0.00127389
21 0.107643 0.00828025 0.0267516 0.184713 0.00165017 0.033121 0.000636943
21.2 0.00127389 0.0210191
21.3 0.000636943
22 0.113376 0.00509554 0.0273885 0.196815 0.00700637
22.2 0.00828025 0.0394904
23 0.0910828 0.00254777 0.113376 0.149045 0.00636943
23.2 0.00254777 0.0363057
24 0.0363057 0.11465 0.120382 0.000636943
24.2 0.000636943 0.000636943 0.0235669
25 0.0133758 0.107643 0.0738854
25.2 0.000636943 0.0369427
26 0.00191083 0.00254777 0.0197452 0.0248408 0.00127389
26.2 0.0611465
27 0.000636943 0.0356688 0.00127389 0.0044586
27.2 0.0770701
28 0.171338 0.000636943
28.2 0.000636943 0.0834395
29 0.194904 0.000636943
29.2 0.0617834
30 0.232484
30.2 0.0484076 0.0528662
31 0.0796178
31.2 0.0961783 0.0267516
32 0.0140127 0.000636943
32.2 0.0923567 0.011465
33 0.00254777 0.00254777
33.2 0.022293 0.00318471
34 0.00191083
34.2 0.00509554 0.00191083
35 0.000636943 0.00127389
36 0.00127389

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