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STRidER: Saudi Arabia

Study statistics

Loci
38 Autosomal STRs
Allele type
Length-based alleles
Sample size
500
Population
Unknown
Location
Saudi Arabia
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Bibliographic information

Date published
Nov. 7, 2024
Title
Recommendations of the DNA Commission of the International Society for Forensic Genetics (ISFG) on Quality Control of Autosomal Short Tandem Repeat Allele Frequency Databasing (STRidER)
Authors
Martin Bodner, Ingo Bastisch, John M. Butler, Rolf Fimmers, Peter Gill, Leonor Gusmão, Niels Morling, Christopher Phillips, Mechthild Prinz, Peter M. Schneider, and Walther Parson
Journal
Forensic Science International: Genetics
Abstract

The statistical evaluation of autosomal Short Tandem Repeat (STR) genotypes is based on allele frequencies. These are empirically determined from sets of randomly selected human samples, compiled into STR databases that have been established in the course of population genetic studies. There is currently no agreed procedure of performing quality control of STR allele frequency databases, and the reliability and accuracy of the data are largely based on the responsibility of the individual contributing research groups. It has been demonstrated with databases of haploid markers (EMPOP for mitochondrial mtDNA, and YHRD for Y-chromosomal loci) that centralized quality control and data curation is essential to minimize error. The concepts employed for quality control involve software-aided likelihood-of-genotype, phylogenetic, and population genetic checks that allow the researchers to compare novel data to established datasets and, thus, maintain the high quality required in forensic genetics.

Here, we present STRidER (http://strider.online), a publicly available, centrally curated online allele frequency database and quality control platform for autosomal STRs. STRidER expands on the previously established ENFSI DNA WG STRbASE and applies standard concepts established for haploid and autosomal markers as well as novel tools to reduce error and increase the quality of autosomal STR data. The platform constitutes a significant improvement and innovation for the scientific community, offering autosomal STR data quality control and reliable STR genotype estimates.

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Normalized frequencies
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Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 523 - - - - - - - -
D10S1248 523 - - - - - - - -
D11S2368 500 - - - - - - - -
D12S391 523 - - - - - - - -
D13S317 523 - - - - - - - -
D13S325 500 - - - - - - - -
D14S1434 500 - - - - - - - -
D15S659 500 - - - - - - - -
D16S539 523 - - - - - - - -
D17S1301 500 - - - - - - - -
D18S1364 500 - - - - - - - -
D18S51 523 - - - - - - - -
D19S253 500 - - - - - - - -
D19S433 523 - - - - - - - -
D1S1656 523 - - - - - - - -
D20S482 500 - - - - - - - -
D21S11 523 - - - - - - - -
D21S2055 500 - - - - - - - -
D22GATA198B05 500 - - - - - - - -
D22S1045 523 - - - - - - - -
D2S1338 523 - - - - - - - -
D2S441 523 - - - - - - - -
D3S1358 523 - - - - - - - -
D3S1744 500 - - - - - - - -
D4S2366 500 - - - - - - - -
D5S2800 500 - - - - - - - -
D5S818 523 - - - - - - - -
D6S474 500 - - - - - - - -
D7S3048 500 - - - - - - - -
D7S820 523 - - - - - - - -
D8S1132 500 - - - - - - - -
D8S1179 523 - - - - - - - -
D9S1122 500 - - - - - - - -
FGA 523 - - - - - - - -
SE33 523 - - - - - - - -
TH01 523 - - - - - - - -
TPOX 523 - - - - - - - -
VWA 523 - - - - - - - -

Allele frequencies

CSF1PO D10S1248 D11S2368 D12S391 D13S317 D13S325 D14S1434 D15S659 D16S539 D17S1301 D18S1364 D18S51 D19S253 D19S433 D1S1656 D20S482 D21S11 D21S2055 D22GATA198B05 D22S1045 D2S1338 D2S441 D3S1358 D3S1744 D4S2366 D5S2800 D5S818 D6S474 D7S3048 D7S820 D8S1132 D8S1179 D9S1122 FGA SE33 TH01 TPOX VWA
4 0.000956023
6 0.001 0.004 0.339388 0.00191205
6.3 0.00478011
7 0.000956023 0.000956023 0.003 0.222 0.0124283 0.001 0.161568 0.000956023
7.3 0.00478011
8 0.00478011 0.105163 0.0305927 0.018 0.000956023 0.0105163 0.165392 0.00191205 0.109943 0.551625
9 0.0114723 0.0181644 0.0325048 0.001 0.006 0.112811 0.001 0.009 0.01 0.0105163 0.299 0.0755258 0.001 0.110899 0.00669216 0.008 0.00382409 0.282027 0.16348
9.3 0.0956023
10 0.304015 0.0621415 0.29 0.037 0.128107 0.042 0.000956023 0.018 0.000956023 0.00191205 0.004 0.00286807 0.124283 0.107 0.123327 0.361377 0.0382409 0.054 0.000956023 0.00956023 0.112811
11 0.294455 0.00860421 0.255258 0.036 0.222 0.359465 0.292 0.001 0.0210325 0.147 0.0114723 0.042065 0.007 0.107075 0.357553 0.172 0.26195 0.1826 0.136711 0.237 0.000956023 0.000956023 0.156788
11.2 0.001 0.00191205
11.3 0.0774379
12 0.345124 0.0372849 0.3413 0.018 0.163 0.212237 0.449 0.045 0.144359 0.353 0.0946463 0.130975 0.039 0.004 0.0114723 0.0803059 0.001 0.243 0.34608 0.002 0.146272 0.188337 0.405 0.00573614 0.0124283
12.2 0.00860421
13 0.0334608 0.167304 0.147228 0.261 0.059 0.136711 0.188 0.247 0.210325 0.16 0.16826 0.0994264 0.222 0.00956023 0.00669216 0.008 0.106 0.021 0.171128 0.345 0.0200765 0.184512 0.256 0.0152964 0.00191205
13.1 0.001
13.2 0.0458891 0.000956023
13.3 0.000956023 0.000956023 0.000956023
14 0.00573614 0.362333 0.001 0.00191205 0.0544933 0.384 0.037 0.0172084 0.023 0.142 0.122371 0.061 0.209369 0.125239 0.477 0.01 0.0583174 0.00382409 0.300191 0.0602294 0.117 0.066 0.238 0.0105163 0.244 0.000956023 0.192161 0.031 0.0516252 0.0286807
14.2 0.0478011
15 0.25717 0.002 0.0248566 0.000956023 0.006 0.207 0.00191205 0.005 0.185 0.118547 0.007 0.141491 0.135755 0.186 0.011 0.507648 0.0334608 0.239006 0.079 0.005 0.003 0.000956023 0.214 0.003 0.200765 0.007 0.0296367 0.156788
15.2 0.00286807 0.126195 0.000956023
15.3 0.0334608
16 0.105163 0.016 0.0114723 0.004 0.004 0.18 0.126 0.117591 0.001 0.0736138 0.251434 0.052 0.131 0.258126 0.0774379 0.00573614 0.313576 0.133 0.002 0.001 0.143 0.003 0.016 0.043021 0.001 0.0583174 0.282027
16.1 0.082
16.2 0.00573614 0.0525813 0.000956023
16.3 0.0535373
17 0.043021 0.048 0.109943 0.012 0.061 0.043 0.0936902 0.00669216 0.0736138 0.003 0.188 0.0544933 0.224665 0.26673 0.34 0.239 0.039 0.068 0.138 0.00764818 0.0745698 0.272467
17.1 0.013
17.2 0.00191205 0.0124283
17.3 0.0219885
18 0.000956023 0.143 0.14914 0.045 0.021 0.143 0.0726577 0.00286807 0.099 0.0984704 0.105163 0.167 0.28 0.012 0.091 0.211 0.00669216 0.107075 0.178776
18.1 0.013
18.3 0.00382409 0.0200765
19 0.241 0.132887 0.167 0.003 0.062 0.041109 0.000956023 0.244 0.127151 0.00669216 0.096 0.006 0.061 0.2 0.0640535 0.0640535 0.0659656
19.1 0.108
19.3 0.00478011 0.00573614
20 0.266 0.100382 0.308 0.006 0.0258126 0.153 0.239006 0.045 0.025 0.075 0.124 0.0697897 0.0439771 0.0124283
20.1 0.01
20.2 0.00669216
21 0.206 0.0889101 0.231 0.00764818 0.11 0.0468451 0.012 0.106 0.105 0.138623 0.0181644 0.000956023
21.2 0.000956023 0.0755258
22 0.059 0.123327 0.141 0.00860421 0.044 0.0143403 0.002 0.003 0.086 0.106 0.122371 0.00191205
22.2 0.00191205 0.0181644
22.3 0.00191205
23 0.016 0.139579 0.071 0.00382409 0.001 0.005 0.0678776 0.165 0.186 0.069 0.184512
23.2 0.00191205 0.0200765
24 0.002 0.0573614 0.017 0.000956023 0.026 0.0640535 0.019 0.181 0.023 0.225621 0.000956023
24.2 0.0277247
25 0.041109 0.001 0.131 0.0296367 0.098 0.004 0.111855
25.2 0.0267686
26 0.00669216 0.121 0.00573614 0.037 0.0516252
26.2 0.0497132
26.3 0.002
27 0.00382409 0.0105163 0.014 0.000956023 0.006 0.00764818
27.2 0.0497132
27.3 0.001
28 0.130975 0.012 0.001 0.00573614
28.2 0.042065
29 0.269598 0.056 0.00286807
29.2 0.0363289
30 0.256214 0.032 0.001 0.000956023
30.2 0.0114723 0.043021
31 0.0458891 0.041 0.000956023
31.2 0.10325 0.000956023 0.0487572
32 0.00669216 0.102
32.2 0.111855 0.0382409
33 0.124 0.00478011
33.2 0.0391969 0.00669216
34 0.07 0.00478011
34.2 0.00669216 0.00478011
35 0.00478011 0.034 0.00191205
35.2 0.000956023 0.000956023
36 0.000956023 0.008
36.2 0.000956023
37 0.000956023 0.002 0.000956023

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