👩‍🔬 leapdna

← Back to Explore

pop.STR: U.S. Europeans

Study statistics

Loci
15 Autosomal STRs
Allele type
Unknown
Sample size
1443
Population
Unknown
Location
U.S. Europeans
More studies with this location

Download

Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
D10S1248 1443 - - 0.781 0.779 - - - -
D12S391 1443 - - 0.866 0.877 - - - -
D16S539 1443 - - 0.780 0.795 - - - -
D18S51 1443 - - 0.871 0.882 - - - -
D19S433 1443 - - 0.809 0.819 - - - -
D1S1656 1443 - - 0.886 0.890 - - - -
D21S11 1443 - - 0.830 0.846 - - - -
D22S1045 1443 - - 0.756 0.766 - - - -
D2S1338 1443 - - 0.873 0.892 - - - -
D2S441 1443 - - 0.777 0.781 - - - -
D3S1358 1443 - - 0.750 0.768 - - - -
D8S1179 1443 - - 0.798 0.819 - - - -
FGA 1443 - - 0.870 0.873 - - - -
TH01 1443 - - 0.749 0.790 - - - -
vWA 1443 - - 0.800 0.812 - - - -

Allele frequencies

D10S1248 D12S391 D16S539 D18S51 D19S433 D1S1656 D21S11 D22S1045 D2S1338 D2S441 D3S1358 D8S1179 FGA TH01 vWA
5 0.001 0.001
6 0.203
7 0.288
8 0.001 0.019 0.002 0.011 0.126
9 0.001 0.17 0.001 0.002 0.004 0.183
9.1 0.002
9.3 0.192
10 0.004 0.119 0.005 0.005 0.007 0.016 0.213 0.08 0.006
11 0.014 0.287 0.007 0.025 0.051 0.135 0.327 0.066 0.001 0.002
11.3 0.048
12 0.073 0.246 0.093 0.078 0.081 0.022 0.104 0.002 0.134 0.001
12.2 0.016
12.3 0.005
13 0.27 0.135 0.111 0.251 0.093 0.004 0.034 0.005 0.27 0.004
13.2 0.001 0.037
13.3 0.001
14 0.302 0.023 0.138 0.297 0.142 0.049 0.226 0.091 0.238 0.098
14.2 0.001 0.051
14.3 0.005
15 0.197 0.051 0.001 0.17 0.118 0.168 0.322 0.001 0.035 0.307 0.139 0.123
15.2 0.061
15.3 0.04
16 0.108 0.037 0.14 0.028 0.155 0.299 0.038 0.001 0.28 0.049 0.238
16.2 0.001 0.027
16.3 0.062
17 0.027 0.113 0.137 0.002 0.044 0.14 0.149 0.202 0.006 0.001 0.262
17.1 0.001
17.2 0.004 0.001
17.3 0.01 0.102
18 0.002 0.213 0.082 0.006 0.01 0.076 0.102 0.001 0.015 0.177
18.2 0.001 0.005
18.3 0.012 0.036
19 0.001 0.155 0.055 0.002 0.149 0.009 0.059 0.079
19.1 0.002
19.2 0.002
19.3 0.005 0.007
20 0.135 0.031 0.127 0.001 0.086 0.013
20.1 0.001
20.2 0.001
21 0.103 0.011 0.062 0.144 0.002
21.2 0.002
22 0.069 0.011 0.076 0.194
22.2 0.005
23 0.049 0.002 0.122 0.158
23.2 0.002
24 0.025 0.001 0.093 0.141
24.2 0.001
25 0.011 0.081 0.098
25.2 0.001
26 0.003 0.023 0.051
27 0.002 0.034 0.002 0.022
28 0.001 0.159 0.005
28.2 0.001
29 0.203 0.003
29.2 0.001
30 0.251 0.001
30.2 0.023 0.001
30.3 0.001
31 0.078
31.2 0.079
32 0.016
32.2 0.095
33 0.005
33.1 0.001
33.2 0.036
34 0.002
34.2 0.001
35 0.008
36 0.004

Locus histograms

D10S1248

D12S391

D16S539

D18S51

D19S433

D1S1656

D21S11

D22S1045

D2S1338

D2S441

D3S1358

D8S1179

FGA

TH01

vWA