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pop.STR: Somalia

Study statistics

Loci
15 Autosomal STRs
Allele type
Unknown
Sample size
404
Population
Unknown

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 404 - - 0.738 0.752 - - - -
D13S317 404 - - 0.703 0.741 - - - -
D16S539 404 - - 0.797 0.781 - - - -
D18S51 404 - - 0.896 0.901 - - - -
D19S433 404 - - 0.804 0.817 - - - -
D21S11 404 - - 0.802 0.825 - - - -
D2S1338 404 - - 0.861 0.857 - - - -
D3S1358 404 - - 0.743 0.736 - - - -
D5S818 404 - - 0.735 0.755 - - - -
D7S820 404 - - 0.750 0.734 - - - -
D8S1179 404 - - 0.777 0.789 - - - -
FGA 404 - - 0.851 0.859 - - - -
TH01 404 - - 0.720 0.715 - - - -
TPOX 404 - - 0.700 0.717 - - - -
vWA 404 - - 0.800 0.799 - - - -

Allele frequencies

CSF1PO D13S317 D16S539 D18S51 D19S433 D21S11 D2S1338 D3S1358 D5S818 D7S820 D8S1179 FGA TH01 TPOX vWA
6 0.001 0.261 0.001
7 0.006 0.001 0.433 0.001
8 0.042 0.16 0.051 0.067 0.178 0.004 0.11 0.354
9 0.093 0.031 0.12 0.032 0.062 0.116 0.274
9.3 0.056
10 0.271 0.051 0.075 0.001 0.042 0.429 0.012 0.024 0.095
10.1 0.014
10.2 0.004
11 0.192 0.198 0.288 0.006 0.019 0.285 0.167 0.017 0.272
11.1 0.001
12 0.355 0.421 0.314 0.058 0.17 0.309 0.132 0.131 0.002
12.1 0.001
12.2 0.006 0.002
13 0.038 0.113 0.115 0.037 0.219 0.246 0.014 0.187
13.2 0.001 0.032
14 0.002 0.027 0.033 0.056 0.301 0.036 0.05 0.017 0.276 0.027
14.2 0.002 0.066
15 0.002 0.121 0.082 0.265 0.001 0.275 0.171
15.2 0.004 0.028
16 0.115 0.043 0.031 0.293 0.078 0.001 0.288
16.2 0.036 0.035
17 0.161 0.002 0.124 0.317 0.016 0.248
17.2 0.027
18 0.134 0.074 0.072 0.002 0.02 0.101
18.2 0.006
19 0.103 0.264 0.004 0.014 0.124
19.2 0.004
20 0.071 0.146 0.011 0.028
21 0.041 0.035 0.087 0.011
21.2 0.002
22 0.007 0.14 0.217 0.001
23 0.058 0.207
23.3 0.019
24 0.061 0.165
24.3 0.006 0.007
25 0.031 0.097
26 0.001 0.041
27 0.025 0.017
28 0.072 0.057
29 0.267 0.027
30 0.283 0.01
30.2 0.001
31 0.068
31.2 0.082 0.001
32 0.019
32.2 0.048
33 0.001
33.2 0.028
34 0.022
34.2 0.011
35 0.035
36 0.021
37 0.006
38 0.004
43.2 0.001

Locus histograms

CSF1PO

D13S317

D16S539

D18S51

D19S433

D21S11

D2S1338

D3S1358

D5S818

D7S820

D8S1179

FGA

TH01

TPOX

vWA