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pop.STR: Sweden

Study statistics

Loci
15 Autosomal STRs
Allele type
Unknown
Sample size
314
Population
Unknown

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 308 - - 0.769 0.720 - - - -
D13S317 311 - - 0.768 0.790 - - - -
D16S539 311 - - 0.781 0.768 - - - -
D18S51 296 - - 0.848 0.871 - - - -
D19S433 313 - - 0.799 0.768 - - - -
D21S11 296 - - 0.807 0.823 - - - -
D2S1338 314 - - 0.866 0.878 - - - -
D3S1358 311 - - 0.743 0.796 - - - -
D5S818 311 - - 0.733 0.684 - - - -
D7S820 310 - - 0.835 0.817 - - - -
D8S1179 295 - - 0.793 0.802 - - - -
FGA 310 - - 0.835 0.861 - - - -
TH01 309 - - 0.783 0.758 - - - -
TPOX 309 - - 0.534 0.557 - - - -
vWA 311 - - 0.833 0.814 - - - -

Allele frequencies

CSF1PO D13S317 D16S539 D18S51 D19S433 D21S11 D2S1338 D3S1358 D5S818 D7S820 D8S1179 FGA TH01 TPOX vWA
5 0.003 0.006
6 0.003 0.248 0.003
7 0.003 0.002 0.023 0.168 0.003
8 0.113 0.016 0.002 0.184 0.008 0.091 0.62
9 0.016 0.082 0.127 0.003 0.026 0.165 0.012 0.123 0.073
9.2 0.002
9.3 0.359
10 0.261 0.077 0.051 0.007 0.005 0.043 0.248 0.098 0.003 0.052
11 0.31 0.283 0.289 0.005 0.003 0.371 0.194 0.068 0.002 0.225
12 0.336 0.305 0.307 0.118 0.078 0.387 0.147 0.159 0.024
12.2 0.002
13 0.045 0.093 0.186 0.155 0.179 0.002 0.159 0.031 0.332 0.002
13.2 0.019
14 0.023 0.047 0.019 0.194 0.398 0.148 0.01 0.01 0.188 0.098
14.2 0.022
15 0.002 0.137 0.176 0.002 0.283 0.112 0.113
15.2 0.035
16 0.113 0.045 0.041 0.199 0.019 0.199
16.2 0.024
17 0.113 0.008 0.207 0.196 0.003 0.257
17.2 0.003
18 0.083 0.002 0.086 0.153 0.026 0.222
19 0.041 0.118 0.016 0.058 0.093
20 0.012 0.166 0.168 0.011
21 0.014 0.025 0.176 0.005
21.2 0.003
22 0.008 0.045 0.173
22.2 0.023
23 0.08 0.14
23.2 0.008
24 0.096 0.148
25 0.102 0.063
25.2 0.002 0.002
26 0.002 0.025 0.013
27 0.035 0.005 0.003
28 0.147
29 0.203
30 0.304
30.2 0.034
31 0.076
31.2 0.078
32 0.012
32.2 0.083
33 0.005
33.2 0.02

Locus histograms

CSF1PO

D13S317

D16S539

D18S51

D19S433

D21S11

D2S1338

D3S1358

D5S818

D7S820

D8S1179

FGA

TH01

TPOX

vWA