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pop.STR: Dominican Republic

Study statistics

Loci
29 Autosomal STRs
Allele type
Unknown
Sample size
487
Population
Unknown
Location
Dominican Republic
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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 487 - - 0.776 0.767 - - - -
D10S1248 486 - - 0.815 0.788 - - - -
D12S391 486 - - 0.877 0.875 - - - -
D13S317 487 - - 0.739 0.759 - - - -
D16S539 487 - - 0.766 0.799 - - - -
D18S51 487 - - 0.899 0.889 - - - -
D19S433 487 - - 0.848 0.836 - - - -
D1S1656 487 - - 0.885 0.892 - - - -
D21S11 487 - - 0.910 0.853 - - - -
D22S1045 485 - - 0.779 0.790 - - - -
D2S1338 487 - - 0.877 0.891 - - - -
D2S441 485 - - 0.790 0.780 - - - -
D3S1358 487 - - 0.739 0.765 - - - -
D5S818 487 - - 0.752 0.753 - - - -
D6S1043 485 - - 0.891 0.878 - - - -
D7S820 487 - - 0.813 0.788 - - - -
D8S1179 487 - - 0.817 0.802 - - - -
F13A01 486 - - 0.856 0.810 - - - -
F13B 486 - - 0.770 0.776 - - - -
FESFPS 486 - - 0.730 0.727 - - - -
FGA 487 - - 0.838 0.874 - - - -
LPL 486 - - 0.716 0.732 - - - -
Penta_C 486 - - 0.776 0.805 - - - -
Penta_D 486 - - 0.856 0.876 - - - -
Penta_E 486 - - 0.903 0.912 - - - -
SE33 485 - - 0.961 0.938 - - - -
TH01 487 - - 0.770 0.793 - - - -
TPOX 486 - - 0.733 0.735 - - - -
vWA 487 - - 0.797 0.803 - - - -

Allele frequencies

CSF1PO D10S1248 D12S391 D13S317 D16S539 D18S51 D19S433 D1S1656 D21S11 D22S1045 D2S1338 D2S441 D3S1358 D5S818 D6S1043 D7S820 D8S1179 F13A01 F13B FESFPS FGA LPL Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
2.2 0.091
3.2 0.119 0.003
4 0.057
5 0.26 0.022 0.021 0.069 0.001 0.002
6 0.203 0.269 0.001 0.205 0.044
6.3 0.001
7 0.042 0.012 0.009 0.247 0.091 0.003 0.009 0.016 0.021 0.091 0.001 0.292 0.01
8 0.036 0.004 0.059 0.034 0.001 0.03 0.184 0.004 0.035 0.142 0.051 0.002 0.027 0.05 0.093 0.176 0.396
9 0.04 0.002 0.05 0.185 0.004 0.001 0.035 0.002 0.093 0.005 0.006 0.247 0.026 0.081 0.193 0.175 0.019 0.001 0.165 0.141
9.3 0.148
10 0.256 0.005 0.051 0.085 0.007 0.007 0.003 0.043 0.166 0.056 0.009 0.318 0.05 0.002 0.25 0.266 0.407 0.051 0.123 0.084 0.001 0.012 0.078
10.1 0.002
11 0.273 0.016 0.274 0.281 0.01 0.04 0.067 0.113 0.34 0.276 0.173 0.221 0.068 0.004 0.002 0.387 0.188 0.299 0.143 0.102 0.001 0.278 0.004
11.2 0.001 0.001
11.3 0.051
12 0.294 0.081 0.372 0.235 0.11 0.114 0.098 0.034 0.113 0.003 0.332 0.204 0.138 0.116 0.008 0.217 0.23 0.217 0.152 0.152 0.006 0.049
12.2 0.023
12.3 0.001
13 0.049 0.24 0.001 0.116 0.152 0.089 0.257 0.094 0.003 0.001 0.048 0.005 0.234 0.114 0.027 0.271 0.023 0.048 0.079 0.122 0.137 0.1 0.006 0.003 0.009
13.1 0.001
13.2 0.004 0.06 0.002
13.3 0.005
14 0.01 0.298 0.075 0.025 0.124 0.253 0.18 0.069 0.24 0.091 0.018 0.07 0.007 0.279 0.016 0.001 0.002 0.043 0.066 0.066 0.04 0.068
14.2 0.003 0.041 0.006
14.3 0.017 0.001
15 0.211 0.08 0.002 0.003 0.148 0.094 0.14 0.32 0.003 0.027 0.3 0.001 0.033 0.001 0.155 0.013 0.006 0.016 0.069 0.039 0.166
15.2 0.001 0.07 0.001 0.002
15.3 0.037
16 0.114 0.04 0.001 0.139 0.014 0.134 0.257 0.061 0.003 0.297 0.005 0.024 0.043 0.005 0.001 0.051 0.074 0.304
16.2 0.015 0.003
16.3 0.061 0.001
17 0.026 0.113 0.141 0.002 0.046 0.145 0.179 0.198 0.067 0.008 0.001 0.05 0.079 0.22
17.1 0.001 0.001
17.2 0.005
17.3 0.007 0.083
18 0.002 0.235 0.081 0.004 0.004 0.013 0.064 0.097 0.118 0.007 0.019 0.093 0.138
18.1 0.001
18.2 0.008
18.3 0.013 0.028
19 0.138 0.075 0.001 0.001 0.162 0.005 0.097 0.075 0.009 0.124 0.07
19.1 0.002
19.2 0.001 0.001
19.3 0.008 0.006 0.005
20 0.113 0.039 0.094 0.002 0.045 0.079 0.005 0.061 0.022
20.2 0.002
20.3 0.007 0.001
21 0.086 0.021 0.083 0.009 0.14 0.02 0.033
21.2 0.001 0.001 0.007
21.3 0.015
22 0.078 0.007 0.081 0.178 0.001 0.005
22.2 0.002 0.022
23 0.059 0.09 0.142 0.001 0.002
23.2 0.022
23.3 0.001
24 0.014 0.087 0.004 0.164 0.001
24.2 0.026
24.3 0.001
25 0.006 0.07 0.001 0.117 0.001
25.2 0.035
26 0.003 0.021 0.039
26.2 0.059
27 0.035 0.004 0.023 0.002
27.2 0.069
28 0.218 0.012
28.2 0.059
29 0.192 0.005 0.004
29.2 0.001 0.044
30 0.208 0.002 0.001
30.2 0.032 0.033
31 0.07
31.2 0.068 0.018
32 0.022
32.1 0.001
32.2 0.075 0.007
33 0.003 0.001
33.1 0.003
33.2 0.037 0.001
34 0.006 0.002
34.2 0.003
35 0.022
36 0.003
37 0.001
45.2 0.003
46.2 0.001

Locus histograms

CSF1PO

D10S1248

D12S391

D13S317

D16S539

D18S51

D19S433

D1S1656

D21S11

D22S1045

D2S1338

D2S441

D3S1358

D5S818

D6S1043

D7S820

D8S1179

F13A01

F13B

FESFPS

FGA

LPL

Penta_C

Penta_D

Penta_E

SE33

TH01

TPOX

vWA