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pop.STR: Brazil - Karitiana

Study statistics

Loci
70 Autosomal STRs
Allele type
Unknown
Sample size
14

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 10 - - 0.500 0.375 - - - -
D10S1248 14 - - 0.357 0.304 - - - -
D10S1435 12 - - 0.750 0.750 - - - -
D10S2325 14 - - 0.929 0.781 - - - -
D11S1304 14 - - 0.786 0.735 - - - -
D11S4463 14 - - 0.571 0.564 - - - -
D12ATA63 12 - - 0.833 0.771 - - - -
D12S297 14 - - 0.357 0.309 - - - -
D12S391 14 - - 0.714 0.681 - - - -
D13S317 11 - - 0.636 0.682 - - - -
D14S1426 14 - - 0.571 0.500 - - - -
D14S1434 14 - - 0.429 0.337 - - - -
D15S822 14 - - 0.786 0.666 - - - -
D16S539 10 - - 0.600 0.585 - - - -
D17S1301 14 - - 0.286 0.245 - - - -
D17S974 12 - - 0.667 0.632 - - - -
D18S51 10 - - 0.900 0.780 - - - -
D19S433 11 - - 0.909 0.698 - - - -
D1S1627 11 - - 0.545 0.463 - - - -
D1S1656 14 - - 0.714 0.776 - - - -
D1S1677 14 - - 0.571 0.459 - - - -
D1S1679 14 - - 0.714 0.791 - - - -
D20S482 14 - - 0.643 0.696 - - - -
D21S102 14 - - 0.571 0.556 - - - -
D21S11 10 - - 0.800 0.680 - - - -
D21S2055 14 - - 0.429 0.457 - - - -
D22S1045 14 - - 0.429 0.599 - - - -
D2S1338 10 - - 0.800 0.645 - - - -
D2S1360 14 - - 0.500 0.597 - - - -
D2S1776 14 - - 0.143 0.337 - - - -
D2S427 14 - - 0.643 0.582 - - - -
D2S441 14 - - 0.357 0.375 - - - -
D3S1358 10 - - 0.800 0.625 - - - -
D3S1744 14 - - 1.000 0.781 - - - -
D3S2406 14 - - 0.714 0.561 - - - -
D3S3053 14 - - 0.714 0.582 - - - -
D3S4529 14 - - 0.571 0.556 - - - -
D3S4545 14 - - 0.286 0.446 - - - -
D4S2364 14 - - 0.500 0.497 - - - -
D4S2366 14 - - 0.714 0.610 - - - -
D4S2408 12 - - 0.250 0.392 - - - -
D5S1457 14 - - 0.643 0.691 - - - -
D5S2500 14 - - 0.643 0.487 - - - -
D5S818 11 - - 0.636 0.628 - - - -
D6S1017 14 - - 0.857 0.737 - - - -
D6S1027 14 - - 0.357 0.579 - - - -
D6S1043 14 - - 0.857 0.712 - - - -
D6S474 14 - - 0.786 0.747 - - - -
D7S1517 14 - - 0.429 0.500 - - - -
D7S2201 14 - - 0.214 0.436 - - - -
D7S820 5 - - 0.600 0.460 - - - -
D8S1132 14 - - 0.571 0.735 - - - -
D8S1179 10 - - 0.600 0.565 - - - -
D9S1118 13 - - 0.923 0.814 - - - -
D9S1120 14 - - 0.857 0.753 - - - -
D9S1122 14 - - 0.571 0.589 - - - -
D9S2157 14 - - 0.714 0.630 - - - -
F13A01 14 - - 0.571 0.702 - - - -
F13B 14 - - 0.357 0.503 - - - -
FESFPS 14 - - 0.429 0.365 - - - -
FGA 9 - - 0.889 0.784 - - - -
LPL 14 - - 0.071 0.069 - - - -
Penta_B 14 - - 0.357 0.293 - - - -
Penta_C 14 - - 0.571 0.673 - - - -
Penta_D 14 - - 0.714 0.658 - - - -
Penta_E 14 - - 1.000 0.839 - - - -
SE33 14 - - 1.000 0.832 - - - -
TH01 11 - - 0.273 0.500 - - - -
TPOX 11 - - 0.455 0.587 - - - -
vWA 10 - - 0.700 0.635 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
3.2 0.357
4 0.179
5 0.107 0.071 0.357
6 0.208 0.107 0.5
7 0.071 0.045 0.077 0.5 0.045
8 0.321 0.091 0.5 0.393 0.214 0.536 0.154 0.036 0.036 0.286 0.591
9 0.25 0.409 0.5 0.3 0.042 0.036 0.464 0.75 0.321 0.286 0.357 0.036 0.5 0.107
10 0.083 0.071 0.364 0.15 0.542 0.536 0.75 0.107 0.464 0.042 0.318 0.2 0.6 0.607 0.964 0.107 0.536 0.045
10.3 0.192
11 0.75 0.083 0.179 0.045 0.143 0.167 0.036 0.25 0.071 0.536 0.143 0.208 0.214 0.5 0.357 0.679 0.7 0.143 0.107 0.786 0.179 0.143 0.091
11.3 0.071
12 0.25 0.333 0.321 0.321 0.208 0.55 0.857 0.042 0.25 0.036 0.107 0.786 0.179 0.393 0.214 0.136 0.286 0.036 0.321 0.1 0.1 0.321 0.071 0.036 0.179 0.179 0.143 0.227
12.3 0.571 0.115
13 0.036 0.25 0.107 0.071 0.091 0.214 0.227 0.364 0.25 0.214 0.607 0.607 0.321 0.179 0.071 0.143 0.107 0.25 0.536 0.5 0.107 0.036
13.2 0.455
13.3 0.286 0.231
14 0.821 0.25 0.321 0.571 0.125 0.107 0.786 0.214 0.25 0.636 0.286 0.643 0.214 0.071 0.071 0.036 0.25 0.393 0.071 0.357 0.107 0.05 0.071 0.821 0.036 0.071
14.2 0.045
14.3 0.071 0.231
15 0.143 0.036 0.125 0.1 0.182 0.321 0.357 0.429 0.536 0.4 0.321 0.107 0.071 0.679 0.357 0.321 0.321 0.071
15.2 0.091
16 0.036 0.333 0.107 0.429 0.15 0.321 0.45 0.25 0.036 0.036 0.143 0.214 0.107 0.036 0.25 0.45
16.3 0.071
17 0.214 0.208 0.321 0.071 0.05 0.1 0.107 0.286 0.071 0.143 0.179 0.35
17.3 0.107
18 0.25 0.05 0.05 0.179 0.071 0.214 0.179 0.107 0.2
18.3 0.143
19 0.821 0.321 0.071 0.05 0.071 0.357 0.056 0.036
19.3 0.036
20 0.429 0.036 0.15 0.071 0.071 0.107
20.3 0.107
21 0.036 0.15 0.429 0.286 0.111 0.071
21.3 0.357
22 0.179 0.464 0.643 0.333 0.036
22.3 0.036 0.036
23 0.143 0.286 0.55 0.036 0.286 0.036
24 0.286 0.036 0.111
25 0.036 0.714 0.036 0.167 0.143
26 0.071 0.143 0.222
26.2 0.071
27 0.036 0.036
28 0.05 0.107
29 0.3
30 0.05
30.3 0.107
31.2 0.15 0.179
31.3 0.714
32 0.071
32.2 0.45
32.3 0.179
33 0.107
34 0.071
36 0.036
37 0.036
38 0.643

Locus histograms

CSF1PO

D10S1248

D10S1435

D10S2325

D11S1304

D11S4463

D12ATA63

D12S297

D12S391

D13S317

D14S1426

D14S1434

D15S822

D16S539

D17S1301

D17S974

D18S51

D19S433

D1S1627

D1S1656

D1S1677

D1S1679

D20S482

D21S102

D21S11

D21S2055

D22S1045

D2S1338

D2S1360

D2S1776

D2S427

D2S441

D3S1358

D3S1744

D3S2406

D3S3053

D3S4529

D3S4545

D4S2364

D4S2366

D4S2408

D5S1457

D5S2500

D5S818

D6S1017

D6S1027

D6S1043

D6S474

D7S1517

D7S2201

D7S820

D8S1132

D8S1179

D9S1118

D9S1120

D9S1122

D9S2157

F13A01

F13B

FESFPS

FGA

LPL

Penta_B

Penta_C

Penta_D

Penta_E

SE33

TH01

TPOX

vWA