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pop.STR: China - Han

Study statistics

Loci
70 Autosomal STRs
Allele type
Unknown
Sample size
43

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 42 - - 0.810 0.742 - - - -
D10S1248 43 - - 0.674 0.739 - - - -
D10S1435 42 - - 0.762 0.737 - - - -
D10S2325 43 - - 0.930 0.846 - - - -
D11S1304 41 - - 0.610 0.604 - - - -
D11S4463 43 - - 0.930 0.726 - - - -
D12ATA63 43 - - 0.767 0.762 - - - -
D12S297 43 - - 0.884 0.837 - - - -
D12S391 43 - - 0.930 0.854 - - - -
D13S317 43 - - 0.767 0.813 - - - -
D14S1426 42 - - 0.786 0.767 - - - -
D14S1434 43 - - 0.605 0.644 - - - -
D15S822 38 - - 0.842 0.832 - - - -
D16S539 42 - - 0.786 0.763 - - - -
D17S1301 42 - - 0.690 0.698 - - - -
D17S974 41 - - 0.732 0.716 - - - -
D18S51 41 - - 0.829 0.825 - - - -
D19S433 43 - - 0.814 0.764 - - - -
D1S1627 42 - - 0.405 0.582 - - - -
D1S1656 43 - - 0.767 0.796 - - - -
D1S1677 43 - - 0.721 0.602 - - - -
D1S1679 42 - - 0.810 0.797 - - - -
D20S482 42 - - 0.762 0.710 - - - -
D21S102 43 - - 0.767 0.703 - - - -
D21S11 42 - - 0.810 0.798 - - - -
D21S2055 43 - - 0.930 0.897 - - - -
D22S1045 43 - - 0.767 0.791 - - - -
D2S1338 43 - - 0.860 0.856 - - - -
D2S1360 43 - - 0.581 0.564 - - - -
D2S1776 40 - - 0.775 0.730 - - - -
D2S427 42 - - 0.690 0.723 - - - -
D2S441 43 - - 0.698 0.782 - - - -
D3S1358 43 - - 0.698 0.676 - - - -
D3S1744 43 - - 0.814 0.840 - - - -
D3S2406 43 - - 0.907 0.918 - - - -
D3S3053 43 - - 0.744 0.678 - - - -
D3S4529 42 - - 0.833 0.755 - - - -
D3S4545 42 - - 0.762 0.782 - - - -
D4S2364 43 - - 0.535 0.635 - - - -
D4S2366 43 - - 0.744 0.757 - - - -
D4S2408 43 - - 0.651 0.727 - - - -
D5S1457 43 - - 0.767 0.785 - - - -
D5S2500 43 - - 0.814 0.827 - - - -
D5S818 43 - - 0.791 0.779 - - - -
D6S1017 43 - - 0.674 0.713 - - - -
D6S1027 41 - - 0.659 0.720 - - - -
D6S1043 42 - - 0.905 0.892 - - - -
D6S474 43 - - 0.744 0.721 - - - -
D7S1517 43 - - 0.860 0.877 - - - -
D7S2201 42 - - 0.595 0.572 - - - -
D7S820 40 - - 0.675 0.712 - - - -
D8S1132 43 - - 0.814 0.828 - - - -
D8S1179 43 - - 0.884 0.844 - - - -
D9S1118 43 - - 0.767 0.824 - - - -
D9S1120 43 - - 0.605 0.600 - - - -
D9S1122 42 - - 0.690 0.708 - - - -
D9S2157 43 - - 0.791 0.788 - - - -
F13A01 42 - - 0.643 0.659 - - - -
F13B 40 - - 0.475 0.503 - - - -
FESFPS 42 - - 0.667 0.638 - - - -
FGA 39 - - 0.872 0.856 - - - -
LPL 38 - - 0.500 0.493 - - - -
Penta_B 41 - - 0.854 0.822 - - - -
Penta_C 41 - - 0.683 0.708 - - - -
Penta_D 41 - - 0.854 0.802 - - - -
Penta_E 41 - - 0.902 0.895 - - - -
SE33 43 - - 0.930 0.940 - - - -
TH01 43 - - 0.674 0.672 - - - -
TPOX 43 - - 0.558 0.612 - - - -
vWA 43 - - 0.814 0.794 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
3.2 0.274
4 0.155
5 0.061 0.267 0.06 0.012 0.024
6 0.012 0.488 0.013 0.024 0.105
7 0.012 0.186 0.024 0.035 0.163 0.012 0.012 0.024 0.267
8 0.598 0.233 0.202 0.11 0.07 0.14 0.186 0.451 0.125 0.012 0.012 0.075 0.024 0.037 0.024 0.058 0.547
8.2 0.244
9 0.036 0.151 0.061 0.128 0.012 0.274 0.012 0.22 0.012 0.047 0.075 0.151 0.198 0.291 0.023 0.105 0.012 0.024 0.024 0.012 0.025 0.263 0.013 0.159 0.317 0.317 0.024 0.488 0.093
9.3 0.058
10 0.238 0.024 0.186 0.174 0.081 0.131 0.048 0.439 0.012 0.048 0.012 0.221 0.063 0.279 0.453 0.395 0.058 0.372 0.012 0.035 0.128 0.419 0.036 0.012 0.2 0.14 0.023 0.048 0.65 0.024 0.671 0.11 0.049 0.134 0.049 0.023 0.047
10.3 0.128
11 0.333 0.214 0.163 0.023 0.244 0.012 0.128 0.298 0.155 0.171 0.07 0.024 0.465 0.233 0.212 0.267 0.058 0.43 0.384 0.174 0.012 0.279 0.349 0.023 0.195 0.095 0.405 0.438 0.128 0.214 0.417 0.079 0.244 0.402 0.122 0.171 0.279
11.3 0.024 0.058 0.151
12 0.286 0.07 0.321 0.047 0.012 0.349 0.012 0.151 0.202 0.012 0.226 0.393 0.037 0.024 0.035 0.083 0.047 0.035 0.071 0.151 0.412 0.209 0.279 0.023 0.186 0.023 0.233 0.128 0.209 0.256 0.024 0.095 0.512 0.2 0.14 0.298 0.081 0.405 0.224 0.256 0.159 0.232 0.122 0.023
12.3 0.012 0.143 0.07
13 0.083 0.349 0.31 0.174 0.233 0.012 0.14 0.058 0.369 0.267 0.026 0.071 0.345 0.195 0.279 0.571 0.105 0.058 0.262 0.047 0.023 0.212 0.047 0.023 0.186 0.167 0.128 0.233 0.07 0.163 0.105 0.146 0.095 0.267 0.024 0.013 0.221 0.393 0.267 0.155 0.098 0.024 0.085 0.037 0.012
13.2 0.012
13.3 0.333 0.256
14 0.012 0.302 0.131 0.047 0.098 0.337 0.07 0.081 0.012 0.107 0.512 0.211 0.048 0.268 0.326 0.286 0.035 0.512 0.44 0.035 0.013 0.14 0.023 0.116 0.023 0.286 0.047 0.209 0.128 0.012 0.012 0.167 0.407 0.036 0.174 0.024 0.174 0.013 0.061 0.037 0.073 0.012 0.244
14.2 0.012 0.151
14.3 0.012 0.357 0.198
15 0.198 0.012 0.012 0.314 0.023 0.047 0.012 0.048 0.22 0.035 0.012 0.36 0.36 0.143 0.279 0.442 0.07 0.333 0.058 0.221 0.122 0.048 0.163 0.14 0.151 0.024 0.302 0.012 0.037 0.098 0.012 0.012
15.2 0.163
15.3 0.131
16 0.058 0.023 0.024 0.081 0.186 0.012 0.012 0.224 0.085 0.198 0.035 0.036 0.198 0.279 0.116 0.131 0.058 0.024 0.116 0.012 0.047 0.558 0.093 0.122 0.012 0.151
16.1 0.081
16.3 0.012
17 0.023 0.146 0.023 0.256 0.012 0.081 0.237 0.024 0.081 0.186 0.128 0.221 0.233 0.083 0.058 0.06 0.047 0.012 0.07 0.012 0.256 0.058 0.146 0.081 0.244
17.3 0.012 0.093 0.012
18 0.105 0.058 0.186 0.039 0.073 0.012 0.035 0.14 0.035 0.233 0.167 0.023 0.244 0.023 0.012 0.026 0.049 0.058 0.233
18.3 0.012 0.012
19 0.198 0.209 0.024 0.048 0.012 0.128 0.023 0.116 0.107 0.058 0.233 0.064 0.049 0.105 0.093
19.1 0.023
19.3 0.026
20 0.14 0.186 0.037 0.06 0.105 0.012 0.07 0.071 0.14 0.174 0.115 0.012 0.047 0.023
20.2 0.023
20.3 0.053
21 0.012 0.128 0.012 0.25 0.116 0.023 0.024 0.14 0.047 0.128 0.012 0.012
21.2 0.012
21.3 0.066
22 0.07 0.012 0.143 0.047 0.628 0.012 0.163 0.116 0.09 0.023
22.2 0.035
22.3 0.079
23 0.023 0.012 0.286 0.174 0.163 0.174 0.081 0.269 0.012 0.023
23.2 0.058
23.3 0.039
24 0.058 0.179 0.047 0.209 0.023 0.093 0.012 0.128
24.2 0.013 0.047
25 0.023 0.024 0.14 0.07 0.023 0.105 0.012 0.064 0.012
25.2 0.058
26 0.186 0.012 0.024 0.047 0.09
26.2 0.07
27 0.035 0.012 0.035
27.2 0.013 0.081
28 0.024 0.058 0.023 0.024
28.2 0.024 0.058
29 0.262 0.023 0.081 0.012 0.012
29.2 0.081
29.3 0.024
30 0.321 0.035 0.07
30.3 0.155
31 0.119 0.023
31.2 0.048 0.047
31.3 0.345
32 0.048 0.012 0.058
32.2 0.083 0.012
32.3 0.25
33 0.058 0.081
33.2 0.06
33.3 0.095
34 0.105 0.012
34.2 0.012 0.012
34.3 0.024
35 0.128 0.081
35.2 0.012
36 0.047 0.105
36.3 0.024
37 0.023 0.116
37.3 0.012
38 0.081
39 0.116
40 0.035
41 0.081
42 0.012
44 0.012
45 0.012
71 0.013

Locus histograms

CSF1PO

D10S1248

D10S1435

D10S2325

D11S1304

D11S4463

D12ATA63

D12S297