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pop.STR: D. R. of Congo - Mbuti Pygmies

Study statistics

Loci
70 Autosomal STRs
Allele type
Unknown
Sample size
13
Population
Mbuti Pygmies
More studies with this population
Location
D. R. of Congo
More studies with this location

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 13 - - 0.692 0.740 - - - -
D10S1248 13 - - 0.923 0.719 - - - -
D10S1435 13 - - 0.769 0.790 - - - -
D10S2325 13 - - 0.846 0.751 - - - -
D11S1304 13 - - 0.846 0.817 - - - -
D11S4463 13 - - 0.846 0.624 - - - -
D12ATA63 13 - - 0.769 0.737 - - - -
D12S297 13 - - 0.923 0.817 - - - -
D12S391 13 - - 0.846 0.855 - - - -
D13S317 13 - - 0.769 0.760 - - - -
D14S1426 13 - - 0.769 0.683 - - - -
D14S1434 13 - - 0.846 0.725 - - - -
D15S822 10 - - 1.000 0.870 - - - -
D16S539 13 - - 0.692 0.775 - - - -
D17S1301 13 - - 0.692 0.544 - - - -
D17S974 13 - - 0.615 0.808 - - - -
D18S51 13 - - 0.692 0.784 - - - -
D19S433 13 - - 0.923 0.808 - - - -
D1S1627 11 - - 0.636 0.645 - - - -
D1S1656 13 - - 0.923 0.849 - - - -
D1S1677 13 - - 0.769 0.621 - - - -
D1S1679 11 - - 0.636 0.826 - - - -
D20S482 13 - - 0.692 0.645 - - - -
D21S102 13 - - 0.769 0.814 - - - -
D21S11 13 - - 0.846 0.831 - - - -
D21S2055 13 - - 0.769 0.834 - - - -
D22S1045 13 - - 0.615 0.775 - - - -
D2S1338 13 - - 0.846 0.775 - - - -
D2S1360 13 - - 0.923 0.837 - - - -
D2S1776 10 - - 0.900 0.750 - - - -
D2S427 13 - - 0.846 0.686 - - - -
D2S441 13 - - 0.615 0.820 - - - -
D3S1358 13 - - 0.769 0.710 - - - -
D3S1744 13 - - 0.846 0.784 - - - -
D3S2406 13 - - 1.000 0.855 - - - -
D3S3053 13 - - 0.538 0.583 - - - -
D3S4529 13 - - 0.846 0.746 - - - -
D3S4545 12 - - 0.750 0.760 - - - -
D4S2364 13 - - 0.538 0.607 - - - -
D4S2366 13 - - 0.231 0.559 - - - -
D4S2408 13 - - 0.692 0.746 - - - -
D5S1457 12 - - 0.750 0.747 - - - -
D5S2500 13 - - 0.692 0.817 - - - -
D5S818 13 - - 0.769 0.678 - - - -
D6S1017 13 - - 0.692 0.760 - - - -
D6S1027 12 - - 0.917 0.802 - - - -
D6S1043 13 - - 0.846 0.811 - - - -
D6S474 13 - - 0.923 0.778 - - - -
D7S1517 13 - - 0.769 0.852 - - - -
D7S2201 13 - - 0.923 0.760 - - - -
D7S820 13 - - 0.769 0.793 - - - -
D8S1132 13 - - 0.846 0.864 - - - -
D8S1179 13 - - 0.769 0.760 - - - -
D9S1118 11 - - 0.818 0.814 - - - -
D9S1120 13 - - 0.692 0.757 - - - -
D9S1122 13 - - 0.769 0.707 - - - -
D9S2157 13 - - 0.769 0.692 - - - -
F13A01 13 - - 0.692 0.722 - - - -
F13B 13 - - 0.923 0.754 - - - -
FESFPS 13 - - 0.538 0.680 - - - -
FGA 13 - - 0.846 0.846 - - - -
LPL 13 - - 0.846 0.692 - - - -
Penta_B 12 - - 0.583 0.774 - - - -
Penta_C 13 - - 0.692 0.713 - - - -
Penta_D 13 - - 0.846 0.837 - - - -
Penta_E 12 - - 0.917 0.872 - - - -
SE33 12 - - 0.917 0.927 - - - -
TH01 13 - - 0.846 0.740 - - - -
TPOX 13 - - 0.692 0.669 - - - -
vWA 13 - - 0.923 0.849 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
2.2 0.077
4 0.038
5 0.154 0.462 0.385 0.208
6 0.192 0.231 0.269 0.042 0.038 0.038 0.077
6.3 0.125
7 0.077 0.077 0.231 0.167 0.045 0.269 0.154 0.042 0.154 0.042 0.077 0.077
7.3 0.115
8 0.115 0.038 0.269 0.077 0.231 0.05 0.038 0.038 0.077 0.125 0.308 0.227 0.038 0.077 0.115 0.077 0.042 0.231 0.192 0.125 0.346 0.115
8.1 0.077
8.2 0.417
9 0.077 0.385 0.077 0.115 0.038 0.192 0.154 0.038 0.15 0.346 0.154 0.115 0.077 0.115 0.077 0.346 0.038 0.042 0.077 0.192 0.167 0.346 0.538
9.1 0.115
9.2 0.167
9.3 0.318
10 0.423 0.038 0.115 0.077 0.231 0.385 0.346 0.154 0.308 0.115 0.038 0.038 0.346 0.038 0.077 0.077 0.5 0.192 0.308 0.192 0.115 0.25 0.231 0.115 0.154 0.346 0.115 0.375 0.077 0.231 0.083 0.077 0.038
10.1 0.077
10.2 0.042
10.3 0.115 0.045
11 0.192 0.231 0.269 0.038 0.038 0.115 0.308 0.077 0.154 0.038 0.269 0.077 0.5 0.038 0.154 0.077 0.2 0.115 0.346 0.154 0.615 0.346 0.308 0.154 0.308 0.269 0.346 0.5 0.423 0.462 0.167 0.038 0.038 0.038 0.115
11.3 0.115 0.077 0.045
12 0.154 0.115 0.077 0.038 0.423 0.115 0.269 0.462 0.192 0.192 0.577 0.115 0.077 0.115 0.154 0.115 0.35 0.154 0.538 0.154 0.038 0.154 0.167 0.115 0.385 0.385 0.192 0.269 0.115 0.269 0.192 0.077 0.269 0.083 0.038 0.038 0.077 0.038
12.1 0.038
12.3 0.038 0.269 0.308 0.091
13 0.231 0.308 0.038 0.038 0.115 0.231 0.077 0.269 0.192 0.05 0.038 0.346 0.231 0.227 0.231 0.038 0.077 0.077 0.25 0.077 0.038 0.125 0.154 0.385 0.115 0.167 0.077 0.154 0.077 0.038 0.231 0.077 0.308 0.038 0.038 0.208 0.077 0.038
13.2 0.038 0.042
13.3 0.154 0.091
14 0.038 0.385 0.077 0.5 0.038 0.269 0.154 0.231 0.1 0.038 0.077 0.154 0.227 0.154 0.154 0.538 0.038 0.115 0.038 0.038 0.038 0.231 0.083 0.038 0.25 0.038 0.192 0.269 0.077 0.077 0.038 0.038 0.083 0.115
14.2 0.045 0.083
14.3 0.038 0.091
15 0.269 0.077 0.346 0.231 0.077 0.038 0.077 0.045 0.038 0.577 0.192 0.192 0.308 0.192 0.385 0.042 0.077 0.042 0.154 0.308 0.077 0.308 0.346 0.077 0.462 0.125 0.083 0.115
15.2 0.038 0.042
16 0.077 0.154 0.115 0.15 0.038 0.192 0.115 0.038 0.231 0.346 0.115 0.154 0.038 0.154 0.231 0.038 0.077 0.192 0.077 0.083 0.042 0.231
16.2 0.038
16.3 0.038
17 0.192 0.192 0.038 0.269 0.2 0.192 0.077 0.346 0.077 0.269 0.346 0.077 0.308 0.115 0.154 0.269 0.038 0.042 0.042 0.192
17.3 0.077
18 0.038 0.077 0.192 0.038 0.038 0.038 0.192 0.038 0.038 0.231 0.038 0.077 0.125 0.077
18.2 0.042
19 0.038 0.038 0.346 0.091 0.385 0.077 0.038 0.154 0.083 0.154
19.1 0.045
19.2 0.042
19.3 0.1
20 0.115 0.231 0.038 0.038 0.115 0.154 0.042 0.042 0.038
20.3 0.1
21 0.154 0.182 0.077 0.038 0.077 0.077 0.077 0.042 0.038
21.3 0.15
22 0.273 0.038 0.038 0.077 0.077 0.038 0.077 0.038
22.3 0.05
23 0.154 0.136 0.077 0.115 0.269 0.077 0.192
23.3 0.1
24 0.038 0.045 0.038 0.115 0.192 0.077 0.231
24.2 0.038
25 0.038 0.045 0.077 0.038 0.231 0.077 0.038
25.2 0.077 0.042
25.3 0.038
26 0.182 0.115 0.308 0.192 0.083 0.038
26.2 0.077
27 0.038 0.417 0.038
27.2 0.038
28 0.038 0.167 0.077 0.154 0.042
29 0.077 0.192 0.083 0.038
29.2 0.042
30 0.308 0.038 0.115
31 0.192 0.154 0.077
31.2 0.038
31.3 0.125
32 0.077 0.042
32.2 0.077
32.3 0.083
33 0.038 0.115 0.115
33.3 0.038
34 0.077 0.192 0.231
35 0.038 0.115
36 0.038 0.038 0.154
37 0.038 0.038
38.1 0.038
41 0.038

Locus histograms

CSF1PO

D10S1248

D10S1435

D10S2325

D11S1304

D11S4463

D12ATA63

D12S297

D12S391

D13S317

D14S1426

D14S1434

D15S822

D16S539

D17S1301

D17S974

D18S51

D19S433

D1S1627

D1S1656

D1S1677

D1S1679

D20S482

D21S102

D21S11

D21S2055

D22S1045

D2S1338

D2S1360

D2S1776

D2S427

D2S441

D3S1358

D3S1744

D3S2406

D3S3053

D3S4529

D3S4545

D4S2364

D4S2366

D4S2408

D5S1457

D5S2500

D5S818

D6S1017

D6S1027

D6S1043

D6S474

D7S1517

D7S2201

D7S820

D8S1132

D8S1179