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pop.STR: France - Basque

Study statistics

Loci
70 Autosomal STRs
Allele type
Unknown
Sample size
24

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 24 - - 0.750 0.648 - - - -
D10S1248 24 - - 0.875 0.784 - - - -
D10S1435 24 - - 0.708 0.734 - - - -
D10S2325 24 - - 0.875 0.858 - - - -
D11S1304 24 - - 0.833 0.771 - - - -
D11S4463 24 - - 0.792 0.741 - - - -
D12ATA63 24 - - 0.542 0.706 - - - -
D12S297 24 - - 0.833 0.793 - - - -
D12S391 24 - - 0.917 0.896 - - - -
D13S317 23 - - 0.783 0.750 - - - -
D14S1426 21 - - 0.810 0.783 - - - -
D14S1434 24 - - 0.792 0.679 - - - -
D15S822 23 - - 0.957 0.841 - - - -
D16S539 24 - - 0.750 0.734 - - - -
D17S1301 21 - - 0.619 0.666 - - - -
D17S974 24 - - 0.583 0.637 - - - -
D18S51 23 - - 0.826 0.829 - - - -
D19S433 24 - - 0.750 0.698 - - - -
D1S1627 24 - - 0.833 0.720 - - - -
D1S1656 24 - - 0.875 0.890 - - - -
D1S1677 24 - - 0.708 0.717 - - - -
D1S1679 23 - - 0.870 0.823 - - - -
D20S482 22 - - 0.909 0.741 - - - -
D21S102 24 - - 0.833 0.764 - - - -
D21S11 24 - - 0.667 0.808 - - - -
D21S2055 24 - - 0.792 0.862 - - - -
D22S1045 24 - - 0.583 0.653 - - - -
D2S1338 24 - - 0.875 0.837 - - - -
D2S1360 24 - - 0.792 0.851 - - - -
D2S1776 24 - - 0.750 0.753 - - - -
D2S427 23 - - 0.739 0.674 - - - -
D2S441 24 - - 0.833 0.763 - - - -
D3S1358 24 - - 0.917 0.791 - - - -
D3S1744 24 - - 0.750 0.753 - - - -
D3S2406 21 - - 0.857 0.863 - - - -
D3S3053 23 - - 0.783 0.715 - - - -
D3S4529 24 - - 0.833 0.789 - - - -
D3S4545 22 - - 0.773 0.733 - - - -
D4S2364 23 - - 0.609 0.559 - - - -
D4S2366 24 - - 0.875 0.823 - - - -
D4S2408 24 - - 0.750 0.718 - - - -
D5S1457 24 - - 0.833 0.764 - - - -
D5S2500 24 - - 0.625 0.785 - - - -
D5S818 24 - - 0.875 0.728 - - - -
D6S1017 23 - - 0.696 0.589 - - - -
D6S1027 22 - - 0.727 0.775 - - - -
D6S1043 24 - - 0.750 0.721 - - - -
D6S474 24 - - 0.750 0.730 - - - -
D7S1517 24 - - 0.875 0.860 - - - -
D7S2201 24 - - 0.583 0.516 - - - -
D7S820 24 - - 0.792 0.795 - - - -
D8S1132 24 - - 0.833 0.869 - - - -
D8S1179 24 - - 0.750 0.799 - - - -
D9S1118 23 - - 0.739 0.747 - - - -
D9S1120 24 - - 0.708 0.641 - - - -
D9S1122 24 - - 0.667 0.687 - - - -
D9S2157 21 - - 0.714 0.798 - - - -
F13A01 24 - - 0.667 0.745 - - - -
F13B 24 - - 0.750 0.688 - - - -
FESFPS 24 - - 0.542 0.735 - - - -
FGA 24 - - 0.875 0.822 - - - -
LPL 24 - - 0.833 0.737 - - - -
Penta_B 22 - - 0.682 0.813 - - - -
Penta_C 24 - - 0.542 0.744 - - - -
Penta_D 24 - - 0.875 0.811 - - - -
Penta_E 24 - - 0.958 0.859 - - - -
SE33 24 - - 0.917 0.924 - - - -
TH01 24 - - 0.792 0.753 - - - -
TPOX 24 - - 0.708 0.634 - - - -
vWA 24 - - 0.875 0.825 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
3.2 0.021
4 0.125
5 0.208 0.25
6 0.188 0.063 0.25
7 0.167 0.021 0.021 0.021 0.087 0.262 0.375 0.063 0.25 0.042
8 0.021 0.042 0.375 0.087 0.143 0.042 0.208 0.261 0.295 0.208 0.022 0.146 0.023 0.021 0.167 0.521
8.2 0.146
9 0.042 0.021 0.022 0.048 0.146 0.024 0.333 0.146 0.104 0.022 0.13 0.229 0.417 0.042 0.063 0.208 0.021 0.021 0.024 0.271 0.021 0.146 0.104 0.333 0.104
9.3 0.208
10 0.313 0.021 0.083 0.021 0.083 0.087 0.146 0.021 0.479 0.022 0.146 0.021 0.333 0.313 0.167 0.326 0.587 0.125 0.208 0.042 0.042 0.565 0.021 0.021 0.292 0.125 0.458 0.229 0.292 0.114 0.083 0.104 0.083 0.104
10.3 0.022 0.109
11 0.458 0.229 0.229 0.063 0.042 0.391 0.021 0.188 0.357 0.146 0.167 0.083 0.292 0.063 0.271 0.188 0.109 0.283 0.146 0.146 0.021 0.271 0.354 0.022 0.136 0.292 0.25 0.146 0.042 0.208 0.262 0.333 0.292 0.159 0.396 0.208 0.083 0.271
11.3 0.104 0.109
12 0.208 0.063 0.396 0.104 0.042 0.146 0.261 0.214 0.042 0.396 0.429 0.239 0.125 0.146 0.042 0.068 0.125 0.25 0.37 0.083 0.021 0.229 0.208 0.313 0.152 0.091 0.417 0.646 0.104 0.146 0.458 0.071 0.167 0.292 0.091 0.167 0.271 0.188
12.3 0.304
13 0.208 0.208 0.167 0.271 0.167 0.292 0.109 0.333 0.375 0.022 0.229 0.143 0.021 0.065 0.167 0.271 0.063 0.292 0.227 0.021 0.042 0.021 0.174 0.271 0.167 0.188 0.063 0.208 0.318 0.063 0.125 0.021 0.313 0.229 0.143 0.021 0.271 0.083 0.114 0.208 0.083 0.104 0.021
13.1 0.021
13.3 0.391 0.042 0.261
14 0.25 0.104 0.042 0.167 0.396 0.229 0.043 0.167 0.396 0.087 0.021 0.048 0.152 0.479 0.396 0.167 0.313 0.364 0.021 0.063 0.021 0.396 0.188 0.042 0.188 0.229 0.354 0.021 0.042 0.068 0.229 0.021 0.146 0.021 0.083 0.19 0.021 0.318 0.208 0.104 0.021 0.125
14.2 0.021 0.022 0.042
14.3 0.283 0.391
15 0.208 0.042 0.104 0.167 0.125 0.354 0.042 0.021 0.095 0.021 0.174 0.167 0.021 0.104 0.313 0.25 0.354 0.063 0.229 0.063 0.208 0.021 0.021 0.292 0.068 0.208 0.208 0.292 0.048 0.021 0.159 0.021 0.042 0.021 0.125
15.2 0.021
15.3 0.063
16 0.25 0.021 0.146 0.021 0.021 0.063 0.065 0.217 0.125 0.021 0.091 0.458 0.063 0.021 0.25 0.104 0.208 0.021 0.083 0.023 0.396 0.042 0.479 0.063 0.083 0.229
16.1 0.104
16.2 0.021
16.3 0.083
17 0.021 0.104 0.354 0.083 0.022 0.021 0.063 0.313 0.125 0.417 0.125 0.021 0.063 0.042 0.042 0.208 0.023 0.021 0.104 0.208
17.1 0.021
17.3 0.042 0.104
18 0.125 0.146 0.022 0.022 0.043 0.063 0.208 0.208 0.021 0.021 0.146 0.042 0.125 0.208
18.3 0.021 0.042
19 0.083 0.087 0.152 0.063 0.104 0.104 0.167 0.125 0.167 0.021 0.104 0.063
19.1 0.292
19.2 0.021
19.3 0.042 0.087
20 0.167 0.022 0.065 0.125 0.083 0.042 0.021 0.146 0.146 0.104 0.021 0.021
20.1 0.042
20.3 0.152
21 0.021 0.083 0.13 0.042 0.188 0.021 0.083 0.188 0.25 0.021 0.063
21.1 0.021
21.3 0.283
22 0.146 0.109 0.25 0.083 0.146 0.042
22.1 0.021
22.2 0.042
22.3 0.152
23 0.063 0.196 0.146 0.125 0.104 0.104 0.25 0.021
23.2 0.042
23.3 0.109
24 0.021 0.283 0.104 0.083 0.023 0.104 0.042 0.063
24.2 0.021
25 0.021 0.022 0.042 0.063 0.125 0.229 0.021 0.083
25.2 0.042
26 0.083 0.021 0.063 0.068 0.042
27 0.042 0.042 0.021 0.477 0.021
27.2 0.042
28 0.208 0.021 0.042 0.091
28.2 0.125
29 0.25 0.021 0.024 0.023
30 0.229 0.042 0.023
30.2 0.021
30.3 0.114
31 0.021 0.024 0.045
31.2 0.125 0.021
31.3 0.068
32 0.021 0.167
32.2 0.125 0.021
32.3 0.068
33 0.063 0.119
33.2 0.021
34 0.146 0.119
35 0.021 0.024
36 0.048
37 0.095
38 0.238
39 0.095
42 0.048

Locus histograms

CSF1PO

D10S1248

D10S1435

D10S2325

D11S1304

D11S4463

D12ATA63

D12S297

D12S391

D13S317

D14S1426

D14S1434

D15S822

D16S539

D17S1301

D17S974

D18S51

D19S433

D1S1627

D1S1656

D1S1677

D1S1679

D20S482

D21S102

D21S11

D21S2055

D22S1045

D2S1338

D2S1360

D2S1776

D2S427

D2S441

D3S1358

D3S1744

D3S2406

D3S3053

D3S4529

D3S4545

D4S2364

D4S2366

D4S2408

D5S1457

D5S2500

D5S818

D6S1017

D6S1027

D6S1043

D6S474