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pop.STR: Israel (Carmel) - Druze

Study statistics

Loci
70 Autosomal STRs
Allele type
Unknown
Sample size
40
Location
Israel (Carmel)
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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 40 - - 0.625 0.679 - - - -
D10S1248 40 - - 0.750 0.786 - - - -
D10S1435 40 - - 0.850 0.798 - - - -
D10S2325 40 - - 0.825 0.837 - - - -
D11S1304 38 - - 0.737 0.791 - - - -
D11S4463 40 - - 0.850 0.751 - - - -
D12ATA63 40 - - 0.800 0.798 - - - -
D12S297 40 - - 0.775 0.729 - - - -
D12S391 40 - - 0.800 0.854 - - - -
D13S317 40 - - 0.800 0.750 - - - -
D14S1426 40 - - 0.600 0.733 - - - -
D14S1434 39 - - 0.769 0.694 - - - -
D15S822 40 - - 0.775 0.839 - - - -
D16S539 40 - - 0.750 0.751 - - - -
D17S1301 39 - - 0.692 0.702 - - - -
D17S974 40 - - 0.550 0.625 - - - -
D18S51 39 - - 0.769 0.844 - - - -
D19S433 40 - - 0.875 0.817 - - - -
D1S1627 38 - - 0.842 0.725 - - - -
D1S1656 40 - - 0.775 0.869 - - - -
D1S1677 38 - - 0.711 0.697 - - - -
D1S1679 40 - - 0.825 0.838 - - - -
D20S482 39 - - 0.692 0.610 - - - -
D21S102 40 - - 0.600 0.659 - - - -
D21S11 40 - - 0.850 0.839 - - - -
D21S2055 40 - - 0.850 0.897 - - - -
D22S1045 40 - - 0.775 0.717 - - - -
D2S1338 40 - - 0.825 0.854 - - - -
D2S1360 40 - - 0.825 0.766 - - - -
D2S1776 36 - - 0.722 0.794 - - - -
D2S427 40 - - 0.675 0.652 - - - -
D2S441 40 - - 0.775 0.699 - - - -
D3S1358 40 - - 0.775 0.755 - - - -
D3S1744 40 - - 0.725 0.792 - - - -
D3S2406 40 - - 0.850 0.887 - - - -
D3S3053 40 - - 0.875 0.710 - - - -
D3S4529 39 - - 0.590 0.739 - - - -
D3S4545 38 - - 0.895 0.802 - - - -
D4S2364 40 - - 0.475 0.549 - - - -
D4S2366 40 - - 0.800 0.791 - - - -
D4S2408 40 - - 0.750 0.705 - - - -
D5S1457 35 - - 0.600 0.750 - - - -
D5S2500 40 - - 0.925 0.849 - - - -
D5S818 40 - - 0.775 0.748 - - - -
D6S1017 38 - - 0.579 0.664 - - - -
D6S1027 40 - - 0.825 0.733 - - - -
D6S1043 40 - - 0.825 0.804 - - - -
D6S474 40 - - 0.725 0.721 - - - -
D7S1517 40 - - 0.850 0.862 - - - -
D7S2201 40 - - 0.625 0.629 - - - -
D7S820 37 - - 0.865 0.793 - - - -
D8S1132 40 - - 0.800 0.852 - - - -
D8S1179 40 - - 0.850 0.794 - - - -
D9S1118 35 - - 0.800 0.840 - - - -
D9S1120 40 - - 0.700 0.727 - - - -
D9S1122 38 - - 0.632 0.658 - - - -
D9S2157 39 - - 0.795 0.756 - - - -
F13A01 40 - - 0.725 0.748 - - - -
F13B 40 - - 0.700 0.684 - - - -
FESFPS 40 - - 0.650 0.684 - - - -
FGA 40 - - 0.925 0.868 - - - -
LPL 39 - - 0.692 0.654 - - - -
Penta_B 37 - - 0.865 0.889 - - - -
Penta_C 40 - - 0.725 0.811 - - - -
Penta_D 40 - - 0.850 0.818 - - - -
Penta_E 40 - - 0.775 0.870 - - - -
SE33 40 - - 0.875 0.893 - - - -
TH01 40 - - 0.675 0.776 - - - -
TPOX 40 - - 0.600 0.630 - - - -
vWA 40 - - 0.750 0.756 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
3.2 0.087
4 0.025
5 0.35 0.388 0.025 0.1
6 0.013 0.275 0.075 0.313
7 0.2 0.013 0.013 0.025 0.157 0.09 0.125 0.063 0.013 0.027 0.013 0.125 0.188
8 0.1 0.263 0.113 0.138 0.025 0.05 0.025 0.111 0.412 0.158 0.2 0.068 0.025 0.157 0.013 0.237 0.068 0.075 0.025 0.025 0.013 0.113 0.55
8.2 0.157
9 0.013 0.037 0.037 0.05 0.163 0.475 0.026 0.138 0.111 0.013 0.125 0.313 0.163 0.013 0.05 0.075 0.122 0.014 0.192 0.25 0.025 0.051 0.027 0.1 0.212 0.25 0.063
9.3 0.013 0.125
10 0.35 0.212 0.053 0.163 0.141 0.037 0.103 0.375 0.105 0.512 0.083 0.063 0.375 0.6 0.113 0.287 0.125 0.1 0.526 0.013 0.063 0.257 0.025 0.013 0.438 0.287 0.154 0.135 0.212 0.175 0.113 0.013 0.087
10.3 0.071
11 0.375 0.188 0.125 0.013 0.013 0.013 0.188 0.037 0.038 0.375 0.321 0.075 0.013 0.237 0.1 0.237 0.225 0.208 0.438 0.237 0.275 0.075 0.125 0.225 0.4 0.092 0.15 0.287 0.425 0.243 0.025 0.263 0.41 0.025 0.45 0.474 0.135 0.325 0.25 0.113 0.225
11.3 0.05 0.229
12 0.237 0.05 0.212 0.212 0.1 0.237 0.05 0.013 0.412 0.375 0.051 0.188 0.385 0.013 0.192 0.138 0.225 0.066 0.026 0.025 0.013 0.347 0.037 0.287 0.026 0.225 0.013 0.229 0.188 0.188 0.132 0.063 0.287 0.425 0.243 0.1 0.075 0.342 0.064 0.013 0.163 0.308 0.068 0.087 0.063 0.25 0.075
12.1 0.025
12.3 0.45 0.029
13 0.037 0.225 0.237 0.037 0.225 0.1 0.275 0.05 0.313 0.321 0.05 0.212 0.192 0.038 0.275 0.316 0.037 0.395 0.231 0.013 0.097 0.063 0.1 0.359 0.188 0.314 0.013 0.2 0.092 0.438 0.037 0.375 0.054 0.225 0.013 0.395 0.154 0.013 0.068 0.1 0.188 0.087 0.025
13.2 0.013
13.3 0.325 0.186
14 0.263 0.237 0.063 0.184 0.375 0.063 0.263 0.037 0.075 0.423 0.175 0.179 0.237 0.329 0.05 0.329 0.564 0.037 0.014 0.313 0.013 0.175 0.269 0.087 0.271 0.1 0.063 0.063 0.063 0.212 0.013 0.014 0.287 0.05 0.026 0.081 0.063 0.05 0.013 0.05 0.05
14.3 0.2 0.129
15 0.263 0.087 0.013 0.289 0.212 0.138 0.037 0.013 0.013 0.026 0.167 0.113 0.013 0.138 0.184 0.128 0.362 0.013 0.237 0.05 0.205 0.014 0.138 0.075 0.013 0.1 0.237 0.225 0.038 0.013 0.203 0.037 0.013 0.013 0.113
15.2 0.113
15.3 0.075 0.013 0.029
16 0.138 0.132 0.037 0.013 0.075 0.167 0.063 0.175 0.013 0.026 0.313 0.037 0.013 0.3 0.087 0.128 0.014 0.113 0.013 0.013 0.287 0.013 0.063 0.438 0.013 0.037 0.081 0.025 0.013 0.375
16.1 0.037
16.2 0.05
16.3 0.063
17 0.063 0.025 0.039 0.037 0.3 0.025 0.037 0.167 0.075 0.013 0.025 0.163 0.275 0.325 0.013 0.087 0.025 0.025 0.05 0.125 0.013 0.138 0.068 0.075 0.05 0.225
17.1 0.037
17.3 0.013 0.037
18 0.15 0.013 0.125 0.013 0.026 0.037 0.025 0.113 0.15 0.225 0.1 0.037 0.113 0.063 0.025 0.014 0.037 0.063 0.188
18.1 0.037
18.3 0.025 0.025
19 0.1 0.038 0.163 0.025 0.013 0.025 0.1 0.113 0.138 0.225 0.063 0.014 0.075 0.05
19.1 0.15
19.3 0.063
20 0.188 0.013 0.075 0.237 0.037 0.037 0.037 0.063 0.113 0.087 0.025 0.037
20.1 0.013
20.3 0.25
21 0.125 0.263 0.013 0.163 0.013 0.05 0.15 0.15 0.013
21.3 0.212
22 0.237 0.113 0.063 0.425 0.2 0.175 0.138 0.014
22.3 0.087 0.013
23 0.1 0.2 0.163 0.063 0.087 0.05 0.15
23.2 0.013
23.3 0.037 0.013
24 0.037 0.075 0.025 0.113 0.063 0.026 0.1 0.025 0.188
24.2 0.025
25 0.025 0.175 0.075 0.1 0.225 0.013 0.125
25.2 0.025
26 0.025 0.138 0.075 0.132 0.025 0.075
26.2 0.05
27 0.013 0.013 0.037 0.316 0.013
27.2 0.013 0.05
28 0.212 0.05 0.025 0.013
28.2 0.125
29 0.163 0.037
29.2 0.063
29.3 0.053
30 0.212 0.013
30.2 0.025 0.25
30.3 0.118
31 0.05 0.025 0.063
31.2 0.125 0.025
31.3 0.237
32 0.075 0.075
32.2 0.15
32.3 0.079
33 0.113 0.1
33.2 0.05 0.025
33.3 0.026
34 0.05 0.05
35 0.025 0.05
36 0.113
37 0.163
38 0.113
39 0.163
40 0.1
98 0.028

Locus histograms

CSF1PO

D10S1248

D10S1435

D10S2325

D11S1304

D11S4463

D12ATA63

D12S297

D12S391

D13S317

D14S1426

D14S1434

D15S822

D16S539

D17S1301

D17S974

D18S51

D19S433

D1S1627

D1S1656

D1S1677

D1S1679

D20S482

D21S102

D21S11

D21S2055

D22S1045

D2S1338

D2S1360

D2S1776

D2S427

D2S441

D3S1358

D3S1744

D3S2406

D3S3053

D3S4529

D3S4545