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pop.STR: Israel (Central) - Palestinian

Study statistics

Loci
70 Autosomal STRs
Allele type
Length-based alleles
Sample size
46
Location
Israel (Central)
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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
License
Public domain
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

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Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 46 - - 0.804 0.707 - - - -
D10S1248 46 - - 0.783 0.791 - - - -
D10S1435 46 - - 0.783 0.732 - - - -
D10S2325 46 - - 0.804 0.848 - - - -
D11S1304 39 - - 0.744 0.778 - - - -
D11S4463 46 - - 0.783 0.769 - - - -
D12ATA63 46 - - 0.826 0.774 - - - -
D12S297 44 - - 0.841 0.823 - - - -
D12S391 46 - - 0.935 0.852 - - - -
D13S317 46 - - 0.761 0.719 - - - -
D14S1426 40 - - 0.850 0.785 - - - -
D14S1434 46 - - 0.696 0.702 - - - -
D15S822 43 - - 0.814 0.847 - - - -
D16S539 46 - - 0.826 0.745 - - - -
D17S1301 43 - - 0.628 0.656 - - - -
D17S974 46 - - 0.739 0.702 - - - -
D18S51 46 - - 0.891 0.869 - - - -
D19S433 46 - - 0.804 0.808 - - - -
D1S1627 46 - - 0.630 0.700 - - - -
D1S1656 46 - - 0.935 0.843 - - - -
D1S1677 42 - - 0.643 0.723 - - - -
D1S1679 44 - - 0.795 0.854 - - - -
D20S482 44 - - 0.636 0.624 - - - -
D21S102 44 - - 0.659 0.723 - - - -
D21S11 46 - - 0.804 0.835 - - - -
D21S2055 46 - - 0.848 0.903 - - - -
D22S1045 46 - - 0.739 0.726 - - - -
D2S1338 46 - - 0.783 0.845 - - - -
D2S1360 46 - - 0.826 0.834 - - - -
D2S1776 42 - - 0.690 0.702 - - - -
D2S427 42 - - 0.738 0.687 - - - -
D2S441 46 - - 0.630 0.744 - - - -
D3S1358 45 - - 0.778 0.755 - - - -
D3S1744 46 - - 0.913 0.853 - - - -
D3S2406 43 - - 1.000 0.900 - - - -
D3S3053 46 - - 0.652 0.661 - - - -
D3S4529 46 - - 0.696 0.703 - - - -
D3S4545 42 - - 0.738 0.809 - - - -
D4S2364 46 - - 0.500 0.507 - - - -
D4S2366 46 - - 0.630 0.756 - - - -
D4S2408 46 - - 0.696 0.777 - - - -
D5S1457 40 - - 0.700 0.730 - - - -
D5S2500 46 - - 0.870 0.789 - - - -
D5S818 46 - - 0.696 0.801 - - - -
D6S1017 46 - - 0.717 0.724 - - - -
D6S1027 46 - - 0.804 0.737 - - - -
D6S1043 46 - - 0.848 0.845 - - - -
D6S474 46 - - 0.783 0.783 - - - -
D7S1517 46 - - 0.870 0.861 - - - -
D7S2201 43 - - 0.628 0.643 - - - -
D7S820 46 - - 0.761 0.776 - - - -
D8S1132 46 - - 0.891 0.872 - - - -
D8S1179 46 - - 0.761 0.829 - - - -
D9S1118 40 - - 0.900 0.843 - - - -
D9S1120 44 - - 0.818 0.753 - - - -
D9S1122 46 - - 0.609 0.654 - - - -
D9S2157 44 - - 0.886 0.816 - - - -
F13A01 44 - - 0.727 0.751 - - - -
F13B 44 - - 0.614 0.734 - - - -
FESFPS 44 - - 0.659 0.720 - - - -
FGA 45 - - 0.756 0.853 - - - -
LPL 43 - - 0.698 0.718 - - - -
Penta_B 40 - - 0.825 0.870 - - - -
Penta_C 43 - - 0.791 0.774 - - - -
Penta_D 46 - - 0.848 0.842 - - - -
Penta_E 46 - - 0.891 0.882 - - - -
SE33 45 - - 0.911 0.936 - - - -
TH01 46 - - 0.696 0.762 - - - -
TPOX 46 - - 0.696 0.630 - - - -
vWA 46 - - 0.804 0.783 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
2.2 0.022
3.2 0.125
4 0.057
5 0.261 0.193 0.035 0.152
6 0.022 0.038 0.227 0.114 0.196
7 0.152 0.026 0.011 0.043 0.043 0.188 0.125 0.375 0.011 0.011 0.141 0.087
8 0.022 0.043 0.359 0.141 0.287 0.087 0.024 0.25 0.033 0.163 0.261 0.035 0.12 0.025 0.25 0.05 0.047 0.011 0.022 0.109 0.543
8.2 0.25
9 0.022 0.011 0.043 0.065 0.05 0.12 0.413 0.136 0.143 0.087 0.38 0.185 0.076 0.011 0.011 0.047 0.13 0.022 0.037 0.102 0.273 0.023 0.07 0.037 0.116 0.228 0.033 0.38 0.141
9.1 0.023
9.3 0.185
10 0.217 0.022 0.217 0.013 0.043 0.261 0.054 0.093 0.304 0.163 0.012 0.33 0.033 0.06 0.141 0.261 0.641 0.054 0.293 0.013 0.109 0.13 0.446 0.011 0.011 0.081 0.337 0.033 0.022 0.011 0.341 0.295 0.267 0.113 0.093 0.163 0.054 0.043 0.087
10.3 0.075
11 0.315 0.011 0.087 0.13 0.043 0.034 0.25 0.05 0.011 0.293 0.314 0.163 0.022 0.087 0.12 0.012 0.341 0.12 0.381 0.293 0.12 0.272 0.087 0.174 0.025 0.326 0.239 0.054 0.054 0.228 0.291 0.25 0.109 0.011 0.174 0.341 0.011 0.33 0.407 0.063 0.384 0.196 0.065 0.217
11.3 0.012 0.076 0.125
12 0.38 0.043 0.38 0.217 0.076 0.326 0.136 0.435 0.287 0.043 0.348 0.477 0.022 0.185 0.033 0.043 0.048 0.045 0.182 0.011 0.357 0.065 0.489 0.011 0.12 0.098 0.075 0.141 0.272 0.196 0.033 0.207 0.512 0.12 0.141 0.013 0.045 0.511 0.136 0.011 0.284 0.186 0.113 0.163 0.141 0.217 0.011 0.011
12.3 0.357 0.037
13 0.033 0.174 0.228 0.076 0.261 0.098 0.239 0.054 0.188 0.315 0.012 0.174 0.093 0.163 0.228 0.359 0.12 0.274 0.216 0.011 0.036 0.054 0.043 0.13 0.478 0.25 0.388 0.022 0.207 0.087 0.413 0.087 0.261 0.035 0.261 0.228 0.125 0.045 0.07 0.175 0.163 0.13 0.109 0.044
13.2 0.011
13.3 0.357 0.225
14 0.011 0.293 0.25 0.087 0.244 0.207 0.011 0.136 0.011 0.063 0.359 0.093 0.023 0.174 0.304 0.37 0.033 0.25 0.545 0.054 0.37 0.056 0.13 0.141 0.109 0.225 0.054 0.043 0.087 0.087 0.25 0.163 0.023 0.043 0.068 0.023 0.225 0.033 0.043 0.056 0.098
14.2 0.054 0.013
14.3 0.238 0.212
15 0.261 0.033 0.011 0.103 0.326 0.065 0.045 0.033 0.075 0.011 0.011 0.098 0.087 0.022 0.185 0.369 0.17 0.413 0.3 0.087 0.163 0.025 0.239 0.109 0.011 0.13 0.011 0.196 0.318 0.022 0.045 0.011 0.075 0.011 0.022 0.076
15.2 0.174 0.013
15.3 0.033 0.036 0.025
16 0.13 0.103 0.076 0.109 0.093 0.098 0.043 0.283 0.036 0.023 0.283 0.033 0.244 0.12 0.087 0.109 0.022 0.011 0.239 0.054 0.065 0.273 0.011 0.087 0.043 0.022 0.228
16.1 0.065
16.2 0.054
16.3 0.033 0.013
17 0.076 0.103 0.293 0.098 0.023 0.087 0.087 0.065 0.228 0.289 0.207 0.12 0.022 0.109 0.109 0.011 0.25 0.011 0.011 0.05 0.011 0.033 0.1 0.283
17.1 0.011
17.2 0.011
17.3 0.011 0.043
18 0.013 0.011 0.087 0.25 0.012 0.098 0.011 0.022 0.109 0.089 0.152 0.185 0.011 0.043 0.196 0.08 0.013 0.054 0.078 0.261
18.1 0.011
18.3 0.033 0.011 0.011
19 0.011 0.034 0.087 0.012 0.054 0.205 0.207 0.011 0.022 0.196 0.087 0.076 0.163 0.067 0.011 0.089 0.033
19.1 0.087
19.3 0.081 0.011
20 0.102 0.185 0.011 0.114 0.174 0.033 0.043 0.054 0.098 0.109 0.078 0.022 0.056 0.022
20.3 0.151
21 0.011 0.098 0.011 0.125 0.011 0.043 0.022 0.011 0.109 0.12 0.2 0.022 0.022
21.2 0.022
21.3 0.279
22 0.141 0.148 0.033 0.228 0.141 0.109 0.122
22.3 0.151
23 0.043 0.159 0.022 0.098 0.239 0.012 0.109 0.098 0.233 0.022
23.2 0.033
23.3 0.058
24 0.011 0.148 0.033 0.033 0.076 0.109 0.033 0.122
24.2 0.011
24.3 0.012
25 0.011 0.08 0.152 0.076 0.043 0.25 0.1
25.2 0.1
25.3 0.023
26 0.011 0.098 0.185 0.095 0.065 0.033
26.2 0.022
27 0.011 0.011 0.098 0.321
27.2 0.044
28 0.109 0.043 0.024 0.011
28.2 0.056
29 0.196 0.043 0.024
29.2 0.078
30 0.239 0.043 0.024
30.2 0.043 0.067
30.3 0.083
31 0.087 0.022 0.081
31.2 0.196 0.044
31.3 0.238
32 0.12 0.105 0.012
32.2 0.098 0.022
32.3 0.107
33 0.033 0.023 0.011
33.1 0.012
33.2 0.022
33.3 0.036
34 0.163 0.14
34.3 0.024
35 0.065 0.116
36 0.022 0.128
37 0.058
38 0.105
39 0.105
40 0.07
41 0.035
42 0.023

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