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pop.STR: Japan - Japanese

Study statistics

Loci
70 Autosomal STRs
Allele type
Unknown
Sample size
28

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 28 - - 0.821 0.723 - - - -
D10S1248 28 - - 0.750 0.741 - - - -
D10S1435 28 - - 0.750 0.710 - - - -
D10S2325 28 - - 0.857 0.809 - - - -
D11S1304 27 - - 0.481 0.546 - - - -
D11S4463 28 - - 0.714 0.770 - - - -
D12ATA63 28 - - 0.571 0.741 - - - -
D12S297 25 - - 0.800 0.843 - - - -
D12S391 28 - - 0.857 0.797 - - - -
D13S317 27 - - 0.889 0.785 - - - -
D14S1426 25 - - 0.880 0.779 - - - -
D14S1434 28 - - 0.750 0.785 - - - -
D15S822 25 - - 0.880 0.818 - - - -
D16S539 28 - - 0.821 0.751 - - - -
D17S1301 27 - - 0.815 0.736 - - - -
D17S974 28 - - 0.786 0.737 - - - -
D18S51 28 - - 0.821 0.845 - - - -
D19S433 28 - - 0.607 0.671 - - - -
D1S1627 26 - - 0.615 0.513 - - - -
D1S1656 28 - - 0.929 0.854 - - - -
D1S1677 28 - - 0.714 0.666 - - - -
D1S1679 28 - - 0.893 0.825 - - - -
D20S482 28 - - 0.750 0.768 - - - -
D21S102 28 - - 0.679 0.727 - - - -
D21S11 28 - - 0.750 0.724 - - - -
D21S2055 28 - - 0.821 0.811 - - - -
D22S1045 28 - - 0.607 0.732 - - - -
D2S1338 28 - - 0.750 0.788 - - - -
D2S1360 28 - - 0.607 0.549 - - - -
D2S1776 27 - - 0.815 0.719 - - - -
D2S427 27 - - 0.667 0.720 - - - -
D2S441 28 - - 0.750 0.725 - - - -
D3S1358 28 - - 0.821 0.740 - - - -
D3S1744 28 - - 0.821 0.764 - - - -
D3S2406 26 - - 0.923 0.910 - - - -
D3S3053 28 - - 0.821 0.732 - - - -
D3S4529 28 - - 0.536 0.739 - - - -
D3S4545 27 - - 0.741 0.752 - - - -
D4S2364 27 - - 0.741 0.658 - - - -
D4S2366 28 - - 0.786 0.730 - - - -
D4S2408 28 - - 0.750 0.708 - - - -
D5S1457 27 - - 0.778 0.740 - - - -
D5S2500 28 - - 0.679 0.723 - - - -
D5S818 28 - - 0.714 0.744 - - - -
D6S1017 27 - - 0.741 0.732 - - - -
D6S1027 28 - - 0.643 0.623 - - - -
D6S1043 28 - - 0.786 0.866 - - - -
D6S474 28 - - 0.607 0.719 - - - -
D7S1517 28 - - 0.893 0.862 - - - -
D7S2201 27 - - 0.556 0.582 - - - -
D7S820 28 - - 0.857 0.765 - - - -
D8S1132 28 - - 0.893 0.828 - - - -
D8S1179 28 - - 0.750 0.826 - - - -
D9S1118 28 - - 0.786 0.795 - - - -
D9S1120 28 - - 0.750 0.671 - - - -
D9S1122 26 - - 0.654 0.732 - - - -
D9S2157 26 - - 0.885 0.754 - - - -
F13A01 28 - - 0.500 0.650 - - - -
F13B 28 - - 0.321 0.401 - - - -
FESFPS 28 - - 0.607 0.651 - - - -
FGA 28 - - 0.857 0.832 - - - -
LPL 27 - - 0.556 0.481 - - - -
Penta_B 27 - - 0.815 0.742 - - - -
Penta_C 28 - - 0.786 0.763 - - - -
Penta_D 28 - - 0.786 0.815 - - - -
Penta_E 28 - - 0.929 0.902 - - - -
SE33 28 - - 0.929 0.926 - - - -
TH01 28 - - 0.857 0.712 - - - -
TPOX 28 - - 0.714 0.668 - - - -
vWA 28 - - 0.607 0.724 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
3.2 0.25
4 0.232
5 0.074 0.22 0.036 0.036 0.071
6 0.018 0.482 0.232
7 0.018 0.25 0.02 0.019 0.232 0.058 0.268
8 0.018 0.648 0.259 0.38 0.125 0.018 0.019 0.125 0.333 0.571 0.089 0.018 0.071 0.089 0.054 0.089 0.393
8.2 0.352
9 0.054 0.214 0.056 0.111 0.06 0.375 0.019 0.339 0.036 0.148 0.222 0.161 0.375 0.071 0.036 0.018 0.179 0.13 0.339 0.286 0.393 0.125
9.3 0.019
10 0.232 0.018 0.071 0.093 0.25 0.196 0.074 0.304 0.019 0.018 0.018 0.375 0.037 0.214 0.357 0.426 0.339 0.018 0.25 0.278 0.036 0.056 0.321 0.071 0.096 0.75 0.018 0.685 0.056 0.071 0.125 0.036 0.018 0.089
10.3 0.107
11 0.214 0.196 0.054 0.018 0.259 0.143 0.143 0.167 0.196 0.018 0.036 0.018 0.036 0.232 0.375 0.333 0.429 0.107 0.333 0.411 0.143 0.019 0.286 0.286 0.019 0.179 0.107 0.481 0.268 0.071 0.077 0.058 0.393 0.167 0.296 0.286 0.161 0.179 0.393
11.2 0.018
11.3 0.1 0.037 0.161
12 0.411 0.054 0.446 0.25 0.089 0.393 0.1 0.241 0.06 0.054 0.214 0.389 0.036 0.071 0.019 0.054 0.071 0.268 0.37 0.161 0.286 0.232 0.018 0.13 0.143 0.321 0.259 0.018 0.071 0.426 0.214 0.143 0.346 0.411 0.148 0.37 0.161 0.179 0.143
12.2 0.036
12.3 0.259
13 0.071 0.321 0.161 0.107 0.089 0.018 0.08 0.037 0.16 0.214 0.054 0.278 0.304 0.321 0.615 0.125 0.161 0.357 0.071 0.093 0.089 0.214 0.268 0.036 0.315 0.018 0.054 0.111 0.107 0.196 0.375 0.037 0.071 0.268 0.346 0.154 0.161 0.111 0.018 0.161 0.054
13.2 0.018
13.3 0.389 0.143
14 0.339 0.161 0.13 0.321 0.107 0.12 0.18 0.286 0.14 0.018 0.037 0.107 0.464 0.327 0.107 0.5 0.232 0.019 0.107 0.018 0.125 0.036 0.304 0.143 0.13 0.036 0.018 0.018 0.161 0.321 0.214 0.018 0.115 0.365 0.018 0.036 0.018 0.018 0.179
14.2 0.02 0.071
14.3 0.241 0.304
15 0.161 0.018 0.018 0.286 0.06 0.018 0.02 0.018 0.019 0.107 0.018 0.019 0.268 0.232 0.179 0.161 0.304 0.107 0.286 0.056 0.411 0.071 0.036 0.054 0.143 0.161 0.019 0.269 0.019 0.107 0.018 0.018
15.2 0.054
15.3 0.037 0.036
16 0.107 0.161 0.125 0.036 0.3 0.125 0.018 0.161 0.054 0.107 0.196 0.321 0.143 0.125 0.054 0.036 0.161 0.071 0.482 0.096 0.019 0.036 0.018 0.125
16.1 0.071
16.3 0.019
17 0.018 0.093 0.054 0.268 0.125 0.2 0.107 0.089 0.018 0.25 0.054 0.196 0.411 0.018 0.036 0.018 0.089 0.036 0.25 0.089 0.071 0.446
17.1 0.018
17.3 0.071
18 0.071 0.04 0.357 0.14 0.018 0.036 0.071 0.125 0.161 0.125 0.179 0.018 0.196 0.089 0.036 0.089 0.054 0.161
18.3 0.054
19 0.24 0.161 0.071 0.107 0.018 0.161 0.018 0.054 0.125 0.054 0.161 0.054 0.018 0.036
20 0.12 0.161 0.036 0.018 0.179 0.018 0.036 0.036 0.196 0.214 0.107 0.036 0.107 0.036
20.1 0.018
20.3 0.08
21 0.02 0.036 0.018 0.179 0.125 0.036 0.161 0.161 0.161 0.036 0.018
21.3 0.04
22 0.071 0.018 0.125 0.643 0.107 0.179 0.268 0.036 0.018
22.2 0.018
22.3 0.06
23 0.036 0.268 0.357 0.143 0.161 0.054 0.179 0.018 0.018
23.1 0.018
23.2 0.054
23.3 0.04
24 0.018 0.196 0.018 0.054 0.018 0.143 0.143
24.2 0.107
25 0.018 0.25 0.071 0.018 0.107 0.054
25.2 0.036
26 0.018 0.321 0.018 0.036 0.054
26.2 0.054
27 0.036
27.2 0.107
28 0.036 0.019 0.018 0.018
28.2 0.018
29 0.161 0.058
29.2 0.125
29.3 0.019
30 0.464 0.018 0.115
30.3 0.148
31 0.071 0.054 0.038
31.2 0.071 0.071
31.3 0.352
32 0.036 0.019
32.2 0.143
32.3 0.296
33 0.054 0.019 0.018
33.2 0.054
33.3 0.093
34 0.089 0.115
34.3 0.074
35 0.036 0.077
36 0.058
36.3 0.019
37 0.096
38 0.038
39 0.154
40 0.038
41 0.096
42 0.058

Locus histograms

CSF1PO

D10S1248

D10S1435

D10S2325

D11S1304

D11S4463

D12ATA63

D12S297

D12S391

D13S317

D14S1426

D14S1434

D15S822

D16S539

D17S1301

D17S974

D18S51

D19S433

D1S1627

D1S1656

D1S1677

D1S1679

D20S482

D21S102

D21S11

D21S2055

D22S1045

D2S1338

D2S1360