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pop.STR: Mexico - Maya

Study statistics

Loci
70 Autosomal STRs
Allele type
Unknown
Sample size
21

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 20 - - 0.550 0.511 - - - -
D10S1248 19 - - 0.789 0.695 - - - -
D10S1435 21 - - 0.714 0.670 - - - -
D10S2325 21 - - 0.857 0.859 - - - -
D11S1304 21 - - 0.619 0.738 - - - -
D11S4463 21 - - 0.810 0.779 - - - -
D12ATA63 21 - - 0.762 0.647 - - - -
D12S297 21 - - 0.714 0.781 - - - -
D12S391 18 - - 0.611 0.772 - - - -
D13S317 20 - - 0.700 0.719 - - - -
D14S1426 19 - - 0.684 0.733 - - - -
D14S1434 18 - - 0.611 0.573 - - - -
D15S822 20 - - 0.750 0.706 - - - -
D16S539 20 - - 0.850 0.771 - - - -
D17S1301 20 - - 0.650 0.526 - - - -
D17S974 21 - - 0.857 0.785 - - - -
D18S51 19 - - 0.632 0.838 - - - -
D19S433 20 - - 0.900 0.845 - - - -
D1S1627 19 - - 0.632 0.688 - - - -
D1S1656 19 - - 0.737 0.841 - - - -
D1S1677 19 - - 0.632 0.639 - - - -
D1S1679 21 - - 0.857 0.812 - - - -
D20S482 21 - - 0.476 0.563 - - - -
D21S102 21 - - 0.714 0.663 - - - -
D21S11 20 - - 0.850 0.848 - - - -
D21S2055 21 - - 0.714 0.806 - - - -
D22S1045 19 - - 0.368 0.597 - - - -
D2S1338 20 - - 0.700 0.740 - - - -
D2S1360 21 - - 0.429 0.719 - - - -
D2S1776 19 - - 0.632 0.608 - - - -
D2S427 20 - - 0.700 0.655 - - - -
D2S441 19 - - 0.632 0.647 - - - -
D3S1358 20 - - 0.550 0.625 - - - -
D3S1744 21 - - 0.667 0.739 - - - -
D3S2406 21 - - 1.000 0.866 - - - -
D3S3053 21 - - 0.905 0.760 - - - -
D3S4529 19 - - 0.684 0.684 - - - -
D3S4545 21 - - 0.810 0.692 - - - -
D4S2364 21 - - 0.619 0.638 - - - -
D4S2366 21 - - 0.714 0.769 - - - -
D4S2408 21 - - 0.476 0.525 - - - -
D5S1457 20 - - 0.750 0.780 - - - -
D5S2500 21 - - 0.762 0.748 - - - -
D5S818 20 - - 0.600 0.626 - - - -
D6S1017 21 - - 0.667 0.759 - - - -
D6S1027 21 - - 0.810 0.692 - - - -
D6S1043 21 - - 0.762 0.746 - - - -
D6S474 21 - - 0.667 0.777 - - - -
D7S1517 21 - - 0.667 0.769 - - - -
D7S2201 21 - - 0.810 0.535 - - - -
D7S820 20 - - 0.700 0.760 - - - -
D8S1132 21 - - 0.905 0.805 - - - -
D8S1179 19 - - 0.842 0.744 - - - -
D9S1118 19 - - 0.684 0.724 - - - -
D9S1120 21 - - 0.714 0.761 - - - -
D9S1122 21 - - 0.571 0.509 - - - -
D9S2157 20 - - 0.650 0.705 - - - -
F13A01 20 - - 0.800 0.724 - - - -
F13B 20 - - 0.650 0.521 - - - -
FESFPS 20 - - 0.500 0.635 - - - -
FGA 16 - - 0.750 0.834 - - - -
LPL 20 - - 0.600 0.579 - - - -
Penta_B 20 - - 0.850 0.778 - - - -
Penta_C 20 - - 0.900 0.729 - - - -
Penta_D 20 - - 0.850 0.761 - - - -
Penta_E 21 - - 0.667 0.876 - - - -
SE33 21 - - 0.810 0.898 - - - -
TH01 20 - - 0.600 0.589 - - - -
TPOX 20 - - 0.500 0.611 - - - -
vWA 20 - - 0.700 0.643 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
3.2 0.4
4 0.175
5 0.024 0.214 0.15 0.05
6 0.024 0.025 0.025 0.45
7 0.024 0.026 0.095 0.05 0.024 0.025 0.342 0.25 0.45
8 0.053 0.024 0.143 0.05 0.421 0.262 0.071 0.048 0.405 0.476 0.025 0.025 0.15 0.525
8.2 0.025
9 0.025 0.024 0.45 0.237 0.2 0.167 0.167 0.184 0.026 0.214 0.119 0.643 0.05 0.167 0.024 0.075 0.262 0.05 0.45 0.05 0.275 0.2 0.048 0.025
9.2 0.026
9.3 0.075
10 0.05 0.119 0.048 0.1 0.083 0.325 0.025 0.286 0.132 0.524 0.526 0.262 0.452 0.238 0.143 0.125 0.071 0.024 0.125 0.053 0.024 0.525 0.125 0.575 0.025 0.35 0.024
10.3 0.025 0.053
11 0.25 0.026 0.167 0.024 0.1 0.026 0.225 0.2 0.167 0.132 0.143 0.053 0.105 0.211 0.119 0.333 0.167 0.024 0.025 0.357 0.55 0.048 0.167 0.024 0.548 0.325 0.026 0.024 0.075 0.55 0.2 0.05 0.1 0.075 0.25
11.2 0.025
11.3 0.026 0.025 0.026
12 0.65 0.357 0.238 0.19 0.048 0.095 0.225 0.158 0.056 0.15 0.65 0.024 0.053 0.025 0.053 0.184 0.095 0.579 0.079 0.31 0.262 0.048 0.2 0.238 0.225 0.119 0.214 0.071 0.024 0.405 0.325 0.184 0.19 0.125 0.225 0.275 0.4 0.175 0.238 0.225
12.2 0.025
12.3 0.525 0.026
13 0.025 0.237 0.381 0.143 0.19 0.024 0.167 0.075 0.079 0.278 0.05 0.1 0.1 0.132 0.075 0.316 0.132 0.079 0.31 0.105 0.05 0.238 0.237 0.095 0.3 0.024 0.167 0.048 0.262 0.333 0.024 0.075 0.237 0.667 0.45 0.175 0.275 0.025 0.2 0.095
13.1 0.1
13.2 0.225
13.3 0.026 0.15 0.132
14 0.474 0.238 0.095 0.262 0.333 0.024 0.583 0.375 0.237 0.225 0.421 0.053 0.526 0.571 0.026 0.158 0.075 0.024 0.071 0.447 0.333 0.275 0.381 0.095 0.395 0.024 0.095 0.075 0.25 0.071 0.025
14.1 0.025
14.2 0.15
14.3 0.175 0.368
15 0.132 0.024 0.095 0.024 0.167 0.024 0.071 0.025 0.184 0.05 0.105 0.211 0.119 0.526 0.525 0.167 0.237 0.024 0.05 0.214 0.071 0.238 0.079 0.071 0.024 0.275 0.05 0.143
15.2 0.125
15.3 0.125 0.026
16 0.053 0.024 0.071 0.095 0.31 0.024 0.028 0.375 0.079 0.075 0.158 0.342 0.3 0.095 0.026 0.024 0.095 0.024 0.026 0.286 0.05 0.119 0.048 0.5
16.1 0.024
16.3 0.105
17 0.026 0.024 0.405 0.024 0.5 0.056 0.184 0.053 0.079 0.075 0.025 0.405 0.053 0.19 0.024 0.286 0.025 0.048 0.119 0.3
17.3 0.289
18 0.024 0.024 0.111 0.05 0.105 0.05 0.025 0.238 0.143 0.024 0.214 0.024 0.025 0.048 0.119 0.125
18.3 0.053
19 0.048 0.357 0.25 0.048 0.425 0.048 0.048 0.167 0.024 0.094 0.071 0.048 0.025
20 0.048 0.361 0.048 0.1 0.024 0.095 0.214 0.031
21 0.111 0.19 0.024 0.262 0.357 0.071 0.094 0.024 0.025
21.3 0.075
22 0.083 0.214 0.048 0.1 0.405 0.119 0.262 0.262 0.031 0.071 0.048
22.2 0.024
22.3 0.025
23 0.026 0.262 0.024 0.225 0.167 0.143 0.024 0.094
23.3 0.025
24 0.167 0.048 0.025 0.143 0.048 0.281
24.2 0.095
24.3 0.025
25 0.071 0.31 0.024 0.024 0.219
25.2 0.119
26 0.262 0.024 0.094
26.2 0.167
27 0.143 0.095 0.031
27.2 0.095
28 0.025
28.2 0.024
29 0.25 0.024 0.031
29.2 0.071
30 0.2 0.024
30.2 0.125
30.3 0.024
31 0.05 0.119
31.2 0.125 0.024
31.3 0.429
32 0.05 0.024 0.048 0.024
32.2 0.1
32.3 0.333
33 0.024
33.2 0.05
33.3 0.048
34.2 0.025
34.3 0.024
35 0.024 0.167
36 0.214
37 0.024 0.095
38 0.119
39 0.119
40 0.024
41 0.071
43 0.024

Locus histograms

CSF1PO

D10S1248

D10S1435

D10S2325

D11S1304

D11S4463

D12ATA63

D12S297

D12S391

D13S317

D14S1426

D14S1434

D15S822

D16S539

D17S1301

D17S974

D18S51

D19S433

D1S1627

D1S1656

D1S1677

D1S1679

D20S482

D21S102

D21S11

D21S2055

D22S1045

D2S1338

D2S1360

D2S1776

D2S427

D2S441

D3S1358

D3S1744

D3S2406

D3S3053

D3S4529

D3S4545

D4S2364