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pop.STR: Orkney Islands - Orcadian

Study statistics

Loci
70 Autosomal STRs
Allele type
Unknown
Sample size
15
Location
Orkney Islands
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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 15 - - 0.667 0.729 - - - -
D10S1248 15 - - 0.667 0.782 - - - -
D10S1435 15 - - 0.800 0.782 - - - -
D10S2325 15 - - 0.800 0.813 - - - -
D11S1304 15 - - 0.533 0.760 - - - -
D11S4463 15 - - 0.600 0.593 - - - -
D12ATA63 15 - - 0.800 0.800 - - - -
D12S297 15 - - 0.867 0.824 - - - -
D12S391 15 - - 0.800 0.867 - - - -
D13S317 15 - - 0.667 0.744 - - - -
D14S1426 14 - - 0.786 0.717 - - - -
D14S1434 15 - - 0.600 0.624 - - - -
D15S822 15 - - 1.000 0.836 - - - -
D16S539 15 - - 0.867 0.762 - - - -
D17S1301 15 - - 0.800 0.658 - - - -
D17S974 15 - - 0.600 0.676 - - - -
D18S51 15 - - 1.000 0.840 - - - -
D19S433 15 - - 0.867 0.716 - - - -
D1S1627 14 - - 0.571 0.658 - - - -
D1S1656 15 - - 0.867 0.864 - - - -
D1S1677 15 - - 0.533 0.629 - - - -
D1S1679 15 - - 0.867 0.833 - - - -
D20S482 14 - - 0.571 0.640 - - - -
D21S102 14 - - 0.571 0.625 - - - -
D21S11 15 - - 0.800 0.791 - - - -
D21S2055 15 - - 0.933 0.811 - - - -
D22S1045 15 - - 0.800 0.622 - - - -
D2S1338 15 - - 0.867 0.847 - - - -
D2S1360 15 - - 0.733 0.767 - - - -
D2S1776 10 - - 0.800 0.700 - - - -
D2S427 15 - - 0.667 0.671 - - - -
D2S441 15 - - 0.800 0.800 - - - -
D3S1358 15 - - 0.933 0.767 - - - -
D3S1744 15 - - 0.733 0.773 - - - -
D3S2406 15 - - 0.933 0.887 - - - -
D3S3053 15 - - 0.933 0.738 - - - -
D3S4529 14 - - 0.714 0.717 - - - -
D3S4545 15 - - 0.800 0.802 - - - -
D4S2364 14 - - 0.429 0.513 - - - -
D4S2366 15 - - 0.933 0.776 - - - -
D4S2408 15 - - 0.733 0.704 - - - -
D5S1457 15 - - 0.800 0.651 - - - -
D5S2500 15 - - 0.667 0.744 - - - -
D5S818 15 - - 0.867 0.729 - - - -
D6S1017 15 - - 0.467 0.751 - - - -
D6S1027 15 - - 0.867 0.731 - - - -
D6S1043 15 - - 0.867 0.767 - - - -
D6S474 15 - - 0.800 0.767 - - - -
D7S1517 15 - - 0.933 0.851 - - - -
D7S2201 15 - - 0.467 0.644 - - - -
D7S820 15 - - 0.867 0.762 - - - -
D8S1132 15 - - 0.867 0.791 - - - -
D8S1179 15 - - 0.667 0.740 - - - -
D9S1118 14 - - 0.929 0.801 - - - -
D9S1120 15 - - 0.733 0.673 - - - -
D9S1122 15 - - 0.667 0.580 - - - -
D9S2157 14 - - 0.857 0.821 - - - -
F13A01 15 - - 0.533 0.562 - - - -
F13B 15 - - 0.600 0.633 - - - -
FESFPS 15 - - 0.667 0.651 - - - -
FGA 15 - - 0.933 0.842 - - - -
LPL 15 - - 0.867 0.684 - - - -
Penta_B 13 - - 0.692 0.796 - - - -
Penta_C 14 - - 0.929 0.691 - - - -
Penta_D 15 - - 0.933 0.751 - - - -
Penta_E 15 - - 0.800 0.849 - - - -
SE33 14 - - 1.000 0.926 - - - -
TH01 15 - - 0.800 0.720 - - - -
TPOX 15 - - 0.667 0.624 - - - -
vWA 15 - - 0.933 0.822 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
3.2 0.1
4 0.133
5 0.2 0.067 0.067
6 0.033 0.067 0.067 0.3
7 0.033 0.133 0.033 0.036 0.179 0.214 0.633 0.033 0.1 0.1
8 0.233 0.067 0.429 0.033 0.2 0.167 0.4 0.167 0.036 0.367 0.038 0.1 0.5
8.2 0.033
9 0.1 0.067 0.067 0.067 0.036 0.1 0.367 0.036 0.1 0.033 0.107 0.2 0.433 0.133 0.067 0.2 0.071 0.1 0.143 0.367 0.1 0.1
9.1 0.036
9.3 0.4
10 0.267 0.067 0.067 0.133 0.036 0.1 0.067 0.4 0.464 0.4 0.2 0.233 0.643 0.167 0.167 0.1 0.067 0.233 0.067 0.1 0.333 0.133 0.033 0.467 0.233 0.333 0.115 0.036 0.1 0.067
10.3 0.25
11 0.167 0.3 0.3 0.067 0.367 0.1 0.4 0.333 0.167 0.143 0.067 0.393 0.067 0.2 0.267 0.167 0.25 0.033 0.2 0.1 0.4 0.067 0.1 0.333 0.3 0.233 0.2 0.25 0.4 0.2 0.038 0.393 0.033 0.067 0.333
11.3 0.033 0.033 0.214
12 0.4 0.033 0.233 0.2 0.133 0.1 0.3 0.214 0.2 0.4 0.167 0.067 0.036 0.133 0.036 0.3 0.4 0.2 0.2 0.167 0.267 0.367 0.1 0.267 0.5 0.067 0.1 0.6 0.367 0.4 0.308 0.357 0.3 0.233
12.3 0.167
13 0.033 0.2 0.2 0.167 0.033 0.267 0.133 0.2 0.067 0.214 0.533 0.133 0.267 0.167 0.2 0.464 0.033 0.167 0.179 0.036 0.033 0.067 0.133 0.357 0.067 0.3 0.133 0.133 0.167 0.267 0.2 0.3 0.033 0.333 0.133 0.214 0.067 0.038 0.071 0.1 0.233
13.2 0.033
13.3 0.033 0.333 0.167 0.214
14 0.233 0.167 0.033 0.4 0.567 0.033 0.267 0.071 0.267 0.167 0.067 0.2 0.467 0.321 0.1 0.533 0.536 0.033 0.233 0.167 0.033 0.033 0.107 0.333 0.467 0.033 0.2 0.333 0.067 0.033 0.107 0.192 0.033 0.067 0.036 0.167
14.3 0.433 0.107
15 0.167 0.067 0.033 0.067 0.1 0.233 0.067 0.033 0.033 0.2 0.1 0.036 0.167 0.233 0.143 0.567 0.033 0.2 0.067 0.25 0.433 0.133 0.067 0.1 0.2 0.071 0.231 0.033 0.067 0.036 0.1
15.2 0.1 0.036
15.3 0.033
16 0.3 0.1 0.067 0.033 0.033 0.133 0.067 0.033 0.2 0.067 0.143 0.2 0.3 0.167 0.286 0.033 0.267 0.033 0.5 0.036 0.038 0.1 0.036 0.2
16.1 0.033
16.3 0.067 0.033
17 0.067 0.067 0.3 0.133 0.067 0.1 0.033 0.1 0.2 0.267 0.2 0.033 0.167 0.133 0.167 0.071 0.233
17.1 0.033
17.3 0.033 0.167
18 0.133 0.267 0.033 0.1 0.067 0.067 0.367 0.033 0.367 0.067 0.167
18.3 0.033
19 0.067 0.067 0.2 0.133 0.067 0.067 0.067 0.067 0.067 0.071 0.133
19.1 0.3
19.2 0.036
20 0.133 0.167 0.2 0.067 0.033 0.1 0.2 0.133
20.1 0.067
20.3 0.233
21 0.033 0.1 0.133 0.033 0.033 0.067 0.133 0.036
21.3 0.2
22 0.067 0.233 0.033 0.333 0.233 0.067 0.2
22.2 0.036
22.3 0.133
23 0.133 0.133 0.233 0.067 0.033 0.167
24 0.033 0.2 0.067 0.067 0.1 0.033 0.2
24.2 0.071
25 0.067 0.1 0.067 0.233 0.1
25.2 0.107
25.3 0.033 0.033
26 0.033 0.267 0.033 0.233 0.167
26.2 0.071
27 0.033 0.033 0.333 0.067
27.2 0.107
28 0.067 0.033 0.067
28.2 0.071
29 0.367 0.067
29.2 0.071
30 0.2 0.067 0.033 0.033
30.2 0.067 0.107
30.3 0.1
31 0.1 0.067 0.133
31.2 0.067
31.3 0.167
32 0.033 0.033
32.2 0.1
32.3 0.133
33 0.167
34 0.1
34.3 0.033
35 0.1
36 0.067
37 0.133
38 0.133
39 0.067
40 0.033

Locus histograms

CSF1PO

D10S1248

D10S1435

D10S2325

D11S1304

D11S4463

D12ATA63

D12S297

D12S391

D13S317

D14S1426

D14S1434

D15S822

D16S539

D17S1301

D17S974

D18S51

D19S433

D1S1627

D1S1656

D1S1677

D1S1679

D20S482

D21S102

D21S11

D21S2055

D22S1045

D2S1338

D2S1360

D2S1776

D2S427

D2S441

D3S1358

D3S1744

D3S2406

D3S3053

D3S4529

D3S4545

D4S2364

D4S2366

D4S2408

D5S1457

D5S2500

D5S818

D6S1017

D6S1027

D6S1043

D6S474

D7S1517

D7S2201

D7S820

D8S1132

D8S1179

D9S1118

D9S1120

D9S1122

D9S2157

F13A01

F13B

FESFPS

FGA

LPL

Penta_B

Penta_C