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pop.STR: Pakistan - Balochi

Study statistics

Loci
70 Autosomal STRs
Allele type
Length-based alleles
Sample size
24

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
License
Public domain
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

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Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 21 - - 0.619 0.653 - - - -
D10S1248 24 - - 0.708 0.764 - - - -
D10S1435 24 - - 0.792 0.722 - - - -
D10S2325 24 - - 0.917 0.852 - - - -
D11S1304 24 - - 0.750 0.801 - - - -
D11S4463 24 - - 0.708 0.792 - - - -
D12ATA63 24 - - 0.667 0.736 - - - -
D12S297 24 - - 0.542 0.725 - - - -
D12S391 24 - - 0.833 0.831 - - - -
D13S317 21 - - 0.714 0.768 - - - -
D14S1426 23 - - 0.696 0.773 - - - -
D14S1434 24 - - 0.542 0.658 - - - -
D15S822 19 - - 0.684 0.875 - - - -
D16S539 21 - - 0.714 0.713 - - - -
D17S1301 24 - - 0.625 0.646 - - - -
D17S974 24 - - 0.583 0.654 - - - -
D18S51 19 - - 0.632 0.850 - - - -
D19S433 21 - - 0.762 0.763 - - - -
D1S1627 22 - - 0.682 0.699 - - - -
D1S1656 24 - - 0.875 0.873 - - - -
D1S1677 23 - - 0.783 0.744 - - - -
D1S1679 24 - - 0.958 0.842 - - - -
D20S482 23 - - 0.565 0.687 - - - -
D21S102 24 - - 0.583 0.605 - - - -
D21S11 21 - - 0.714 0.836 - - - -
D21S2055 24 - - 0.792 0.869 - - - -
D22S1045 24 - - 0.792 0.740 - - - -
D2S1338 21 - - 0.762 0.844 - - - -
D2S1360 24 - - 0.958 0.839 - - - -
D2S1776 18 - - 0.667 0.690 - - - -
D2S427 22 - - 0.864 0.720 - - - -
D2S441 24 - - 0.583 0.711 - - - -
D3S1358 21 - - 0.667 0.770 - - - -
D3S1744 24 - - 0.667 0.808 - - - -
D3S2406 24 - - 0.917 0.894 - - - -
D3S3053 24 - - 0.667 0.708 - - - -
D3S4529 23 - - 0.652 0.703 - - - -
D3S4545 24 - - 0.750 0.792 - - - -
D4S2364 24 - - 0.458 0.530 - - - -
D4S2366 24 - - 0.750 0.783 - - - -
D4S2408 24 - - 0.750 0.710 - - - -
D5S1457 23 - - 0.739 0.734 - - - -
D5S2500 24 - - 0.708 0.777 - - - -
D5S818 21 - - 0.667 0.738 - - - -
D6S1017 24 - - 0.583 0.676 - - - -
D6S1027 24 - - 0.833 0.790 - - - -
D6S1043 24 - - 0.833 0.849 - - - -
D6S474 24 - - 0.667 0.786 - - - -
D7S1517 24 - - 0.875 0.850 - - - -
D7S2201 24 - - 0.625 0.605 - - - -
D7S820 21 - - 0.905 0.798 - - - -
D8S1132 24 - - 0.667 0.815 - - - -
D8S1179 21 - - 0.857 0.805 - - - -
D9S1118 24 - - 0.708 0.808 - - - -
D9S1120 24 - - 0.625 0.736 - - - -
D9S1122 24 - - 0.708 0.711 - - - -
D9S2157 24 - - 0.875 0.833 - - - -
F13A01 24 - - 0.625 0.695 - - - -
F13B 24 - - 0.667 0.728 - - - -
FESFPS 24 - - 0.667 0.734 - - - -
FGA 21 - - 0.905 0.822 - - - -
LPL 24 - - 0.667 0.755 - - - -
Penta_B 24 - - 0.750 0.861 - - - -
Penta_C 24 - - 0.792 0.790 - - - -
Penta_D 24 - - 0.833 0.811 - - - -
Penta_E 24 - - 0.833 0.901 - - - -
SE33 24 - - 1.000 0.924 - - - -
TH01 21 - - 0.905 0.789 - - - -
TPOX 21 - - 0.667 0.685 - - - -
vWA 21 - - 0.857 0.791 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
3.2 0.083
4 0.063
5 0.375 0.5 0.063 0.125
6 0.042 0.063 0.167 0.042 0.31
7 0.083 0.021 0.048 0.125 0.167 0.188 0.042 0.125 0.214
8 0.021 0.313 0.214 0.152 0.021 0.028 0.417 0.208 0.292 0.262 0.024 0.021 0.313 0.021 0.021 0.021 0.063 0.021 0.143 0.405
8.2 0.043
9 0.125 0.024 0.109 0.071 0.229 0.042 0.125 0.056 0.063 0.188 0.188 0.143 0.021 0.021 0.021 0.071 0.063 0.188 0.104 0.042 0.167 0.125 0.021 0.143 0.095
9.2 0.022
9.3 0.167
10 0.31 0.104 0.021 0.095 0.043 0.146 0.095 0.021 0.479 0.25 0.583 0.028 0.229 0.438 0.583 0.354 0.271 0.083 0.071 0.5 0.021 0.021 0.104 0.286 0.19 0.333 0.271 0.333 0.271 0.292 0.146 0.042 0.024 0.119
10.3 0.023 0.125
11 0.214 0.021 0.229 0.25 0.125 0.214 0.109 0.021 0.429 0.333 0.25 0.053 0.024 0.068 0.125 0.043 0.167 0.292 0.25 0.458 0.042 0.354 0.125 0.083 0.229 0.333 0.083 0.042 0.208 0.333 0.167 0.024 0.25 0.208 0.313 0.292 0.146 0.271 0.292 0.083 0.357
11.3 0.023 0.083 0.208
12 0.452 0.375 0.125 0.083 0.313 0.063 0.357 0.391 0.042 0.053 0.262 0.479 0.042 0.132 0.048 0.083 0.022 0.104 0.472 0.042 0.229 0.146 0.021 0.13 0.271 0.333 0.146 0.125 0.208 0.521 0.119 0.048 0.042 0.333 0.021 0.271 0.188 0.042 0.125 0.167 0.146 0.024
12.2 0.024
12.3 0.205 0.042
13 0.024 0.104 0.271 0.083 0.063 0.229 0.104 0.125 0.048 0.152 0.521 0.105 0.143 0.104 0.132 0.357 0.364 0.083 0.239 0.261 0.021 0.139 0.188 0.239 0.125 0.348 0.042 0.119 0.042 0.292 0.083 0.25 0.042 0.048 0.119 0.333 0.25 0.146 0.042 0.125 0.063 0.188 0.063 0.021
13.1 0.043
13.2 0.024
13.3 0.341 0.25
14 0.354 0.104 0.167 0.208 0.333 0.042 0.333 0.024 0.043 0.208 0.132 0.042 0.263 0.286 0.318 0.083 0.217 0.457 0.104 0.028 0.104 0.095 0.125 0.104 0.435 0.063 0.348 0.042 0.104 0.146 0.208 0.31 0.042 0.063 0.104 0.021 0.021 0.042 0.021 0.021 0.021 0.071
14.1 0.022
14.2 0.024
14.3 0.341 0.229
15 0.146 0.021 0.146 0.104 0.104 0.021 0.024 0.063 0.021 0.132 0.024 0.25 0.348 0.174 0.354 0.083 0.357 0.042 0.196 0.043 0.292 0.104 0.271 0.19 0.25 0.021 0.125 0.021 0.021 0.104 0.042 0.071
15.2 0.143 0.021
15.3 0.021
16 0.25 0.146 0.104 0.021 0.042 0.021 0.053 0.105 0.048 0.125 0.174 0.065 0.188 0.119 0.042 0.109 0.042 0.167 0.095 0.333 0.042 0.063 0.125 0.083 0.238
16.1 0.146
16.3 0.042 0.068 0.021
17 0.125 0.104 0.021 0.375 0.063 0.105 0.105 0.083 0.063 0.119 0.238 0.25 0.022 0.042 0.083 0.063 0.083 0.292 0.021 0.042 0.063 0.063 0.262
17.3 0.021
18 0.042 0.042 0.271 0.026 0.021 0.19 0.143 0.25 0.063 0.021 0.313 0.042 0.042 0.125 0.125 0.262
18.1 0.021
18.3 0.021 0.021
19 0.063 0.026 0.053 0.25 0.214 0.048 0.208 0.167 0.188 0.188 0.119 0.042 0.125 0.048
19.1 0.125
19.3 0.132 0.021
20 0.063 0.042 0.214 0.021 0.063 0.042 0.063 0.146 0.048 0.021 0.042 0.048
20.1 0.021
20.3 0.105
21 0.167 0.167 0.024 0.146 0.021 0.063 0.125 0.119 0.021
21.3 0.211
22 0.229 0.146 0.024 0.271 0.229 0.063 0.095
22.2 0.024
22.3 0.079
23 0.042 0.083 0.071 0.083 0.063 0.063 0.071
24 0.021 0.146 0.071 0.042 0.104 0.021 0.31 0.021
25 0.021 0.125 0.25 0.024 0.167 0.188 0.19
25.2 0.063
26 0.021 0.125 0.048 0.146 0.25 0.021 0.024
26.2 0.021
27 0.083 0.271
27.2 0.104
28 0.143 0.021 0.042 0.021
28.2 0.083
29 0.262 0.021 0.021 0.021
29.2 0.063
30 0.19 0.021 0.021
30.2 0.048 0.021
30.3 0.042
31 0.095 0.063 0.021
31.2 0.143 0.042
31.3 0.25
32 0.042 0.146
32.2 0.071
32.3 0.063
33 0.021 0.104
33.2 0.048
33.3 0.042
34 0.063 0.042
34.3 0.021
35 0.063 0.104
36 0.021 0.083
37 0.167
38 0.083
39 0.125
40 0.042
42 0.021
43 0.021
45 0.021

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