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pop.STR: Pakistan - Hazara

Study statistics

Loci
70 Autosomal STRs
Allele type
Unknown
Sample size
22

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 22 - - 0.727 0.677 - - - -
D10S1248 22 - - 0.682 0.789 - - - -
D10S1435 22 - - 0.818 0.706 - - - -
D10S2325 22 - - 0.909 0.842 - - - -
D11S1304 21 - - 0.714 0.681 - - - -
D11S4463 22 - - 0.727 0.753 - - - -
D12ATA63 22 - - 0.682 0.695 - - - -
D12S297 21 - - 0.952 0.861 - - - -
D12S391 22 - - 0.727 0.843 - - - -
D13S317 22 - - 0.727 0.764 - - - -
D14S1426 21 - - 0.857 0.807 - - - -
D14S1434 22 - - 0.636 0.650 - - - -
D15S822 20 - - 0.800 0.805 - - - -
D16S539 22 - - 0.864 0.783 - - - -
D17S1301 22 - - 0.682 0.709 - - - -
D17S974 22 - - 0.864 0.743 - - - -
D18S51 21 - - 0.619 0.789 - - - -
D19S433 22 - - 0.818 0.824 - - - -
D1S1627 22 - - 0.636 0.645 - - - -
D1S1656 22 - - 0.864 0.834 - - - -
D1S1677 22 - - 0.818 0.666 - - - -
D1S1679 21 - - 0.714 0.796 - - - -
D20S482 22 - - 0.818 0.678 - - - -
D21S102 21 - - 0.714 0.732 - - - -
D21S11 22 - - 0.818 0.817 - - - -
D21S2055 22 - - 0.864 0.876 - - - -
D22S1045 22 - - 0.727 0.771 - - - -
D2S1338 22 - - 0.864 0.866 - - - -
D2S1360 22 - - 0.727 0.682 - - - -
D2S1776 22 - - 0.682 0.790 - - - -
D2S427 21 - - 0.524 0.662 - - - -
D2S441 22 - - 0.636 0.717 - - - -
D3S1358 22 - - 0.727 0.740 - - - -
D3S1744 22 - - 0.773 0.744 - - - -
D3S2406 20 - - 0.950 0.913 - - - -
D3S3053 22 - - 0.773 0.687 - - - -
D3S4529 22 - - 0.773 0.747 - - - -
D3S4545 21 - - 0.762 0.815 - - - -
D4S2364 21 - - 0.857 0.663 - - - -
D4S2366 22 - - 0.818 0.813 - - - -
D4S2408 22 - - 0.773 0.747 - - - -
D5S1457 21 - - 0.762 0.783 - - - -
D5S2500 22 - - 0.773 0.826 - - - -
D5S818 22 - - 0.682 0.682 - - - -
D6S1017 22 - - 0.727 0.685 - - - -
D6S1027 22 - - 0.727 0.751 - - - -
D6S1043 22 - - 0.909 0.830 - - - -
D6S474 22 - - 0.909 0.745 - - - -
D7S1517 22 - - 0.909 0.830 - - - -
D7S2201 20 - - 0.550 0.542 - - - -
D7S820 22 - - 0.773 0.779 - - - -
D8S1132 22 - - 0.773 0.783 - - - -
D8S1179 22 - - 0.818 0.771 - - - -
D9S1118 21 - - 0.714 0.738 - - - -
D9S1120 22 - - 0.773 0.710 - - - -
D9S1122 22 - - 0.636 0.716 - - - -
D9S2157 22 - - 0.682 0.809 - - - -
F13A01 22 - - 0.727 0.770 - - - -
F13B 22 - - 0.591 0.573 - - - -
FESFPS 22 - - 0.818 0.729 - - - -
FGA 21 - - 0.810 0.879 - - - -
LPL 22 - - 0.591 0.615 - - - -
Penta_B 22 - - 0.773 0.842 - - - -
Penta_C 22 - - 0.682 0.756 - - - -
Penta_D 22 - - 0.864 0.800 - - - -
Penta_E 22 - - 0.955 0.865 - - - -
SE33 22 - - 0.909 0.931 - - - -
TH01 22 - - 0.909 0.790 - - - -
TPOX 22 - - 0.682 0.666 - - - -
vWA 22 - - 0.682 0.763 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
3.2 0.159
4 0.091
5 0.19 0.024 0.25 0.023
6 0.023 0.318 0.023 0.227
7 0.136 0.023 0.119 0.045 0.182 0.023 0.023 0.114 0.159
8 0.045 0.476 0.295 0.214 0.023 0.023 0.114 0.136 0.25 0.318 0.318 0.227 0.023 0.159 0.023 0.136 0.477
8.2 0.143
9 0.068 0.045 0.071 0.182 0.364 0.119 0.091 0.023 0.31 0.273 0.273 0.023 0.025 0.045 0.023 0.227 0.091 0.295 0.25 0.023 0.25 0.136
9.2 0.024
9.3 0.227
10 0.341 0.068 0.136 0.024 0.114 0.091 0.091 0.273 0.136 0.357 0.114 0.295 0.318 0.429 0.136 0.205 0.068 0.159 0.409 0.025 0.205 0.023 0.091 0.591 0.159 0.477 0.159 0.023 0.091 0.114
10.2 0.023
10.3 0.071
11 0.364 0.136 0.182 0.091 0.024 0.318 0.024 0.114 0.25 0.25 0.182 0.045 0.068 0.262 0.227 0.295 0.386 0.045 0.238 0.227 0.273 0.024 0.205 0.477 0.114 0.273 0.425 0.25 0.114 0.205 0.136 0.364 0.159 0.114 0.273 0.182 0.091 0.273
11.3 0.048 0.024 0.023 0.071
12 0.273 0.091 0.432 0.273 0.068 0.273 0.071 0.159 0.19 0.295 0.432 0.068 0.024 0.091 0.023 0.091 0.023 0.045 0.238 0.273 0.205 0.409 0.024 0.091 0.167 0.182 0.227 0.205 0.068 0.091 0.525 0.25 0.136 0.023 0.318 0.023 0.295 0.364 0.295 0.273 0.25 0.227
12.3 0.214 0.048
13 0.023 0.227 0.273 0.136 0.364 0.023 0.19 0.023 0.286 0.273 0.05 0.159 0.182 0.143 0.136 0.432 0.182 0.318 0.024 0.023 0.091 0.045 0.023 0.205 0.273 0.159 0.31 0.068 0.114 0.068 0.341 0.091 0.273 0.386 0.364 0.205 0.159 0.091 0.068 0.182 0.091 0.045
13.1 0.024
13.3 0.357 0.452
14 0.25 0.114 0.023 0.071 0.159 0.045 0.071 0.023 0.143 0.5 0.25 0.023 0.286 0.318 0.386 0.091 0.409 0.409 0.023 0.045 0.068 0.023 0.273 0.091 0.262 0.136 0.023 0.114 0.364 0.182 0.068 0.023 0.227 0.091 0.045 0.023 0.136 0.023 0.159
14.2 0.114 0.023
14.3 0.405 0.167
15 0.25 0.045 0.095 0.273 0.045 0.095 0.286 0.068 0.227 0.364 0.227 0.295 0.341 0.068 0.25 0.048 0.25 0.114 0.136 0.114 0.136 0.273 0.045 0.023 0.091 0.068 0.045
15.2 0.159
15.3 0.023 0.048
16 0.159 0.095 0.045 0.136 0.024 0.075 0.143 0.023 0.023 0.273 0.023 0.273 0.318 0.205 0.205 0.091 0.068 0.045 0.455 0.023 0.068 0.023 0.045 0.205
16.1 0.068
16.2 0.045
17 0.023 0.262 0.455 0.136 0.325 0.071 0.023 0.114 0.114 0.182 0.364 0.023 0.045 0.159 0.045 0.227 0.023 0.159 0.045 0.364
17.2 0.023
17.3 0.023 0.114
18 0.023 0.071 0.205 0.025 0.045 0.068 0.068 0.273 0.227 0.386 0.091 0.024 0.023 0.023 0.182
18.1 0.023
18.3 0.068
19 0.19 0.114 0.025 0.091 0.045 0.068 0.114 0.114 0.095 0.114 0.045
19.1 0.068
19.3 0.023
20 0.071 0.227 0.024 0.143 0.091 0.023 0.091 0.227 0.068 0.119 0.091
20.3 0.075
21 0.023 0.136 0.024 0.095 0.045 0.114 0.023 0.136 0.071 0.023 0.023
21.2 0.023
21.3 0.075
22 0.068 0.31 0.205 0.523 0.205 0.159 0.119
22.3 0.075
23 0.091 0.214 0.182 0.091 0.068 0.045 0.095
23.2 0.048 0.023
23.3 0.025
24 0.167 0.068 0.091 0.024 0.182 0.167
24.2 0.136
25 0.071 0.227 0.136 0.114 0.159 0.045 0.19
25.2 0.045
26 0.159 0.045 0.119 0.023 0.048
26.2 0.045
27 0.023 0.19
27.2 0.023
28 0.091 0.023 0.023 0.025
28.2 0.068
29 0.205 0.023 0.075 0.048 0.024
29.2 0.068
30 0.318 0.05
30.2 0.068 0.023
30.3 0.071
31 0.068 0.023
31.2 0.045 0.023
31.3 0.31
32 0.023 0.114 0.075
32.2 0.136
32.3 0.167
33 0.023 0.1
33.2 0.023 0.023
33.3 0.048
34 0.091 0.125
34.2 0.023
34.3 0.024
35 0.114 0.125
36 0.05
37 0.023 0.1
38 0.05
39 0.075
41 0.075
42 0.075

Locus histograms

CSF1PO

D10S1248

D10S1435

D10S2325

D11S1304

D11S4463

D12ATA63

D12S297

D12S391

D13S317

D14S1426

D14S1434

D15S822

D16S539

D17S1301

D17S974

D18S51

D19S433

D1S1627

D1S1656

D1S1677

D1S1679

D20S482

D21S102

D21S11

D21S2055

D22S1045

D2S1338

D2S1360

D2S1776