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pop.STR: Pakistan - Kalash

Study statistics

Loci
70 Autosomal STRs
Allele type
Unknown
Sample size
23

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php">http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 23 - - 0.739 0.653 - - - -
D10S1248 22 - - 0.909 0.790 - - - -
D10S1435 23 - - 0.696 0.658 - - - -
D10S2325 23 - - 0.696 0.825 - - - -
D11S1304 22 - - 0.773 0.799 - - - -
D11S4463 23 - - 0.696 0.720 - - - -
D12ATA63 23 - - 0.913 0.747 - - - -
D12S297 23 - - 0.739 0.813 - - - -
D12S391 22 - - 0.955 0.874 - - - -
D13S317 23 - - 0.696 0.767 - - - -
D14S1426 23 - - 0.696 0.663 - - - -
D14S1434 23 - - 0.565 0.693 - - - -
D15S822 21 - - 0.905 0.844 - - - -
D16S539 23 - - 0.739 0.746 - - - -
D17S1301 23 - - 0.739 0.615 - - - -
D17S974 23 - - 0.739 0.597 - - - -
D18S51 23 - - 0.913 0.825 - - - -
D19S433 23 - - 0.826 0.822 - - - -
D1S1627 20 - - 0.550 0.579 - - - -
D1S1656 22 - - 0.909 0.853 - - - -
D1S1677 23 - - 0.652 0.740 - - - -
D1S1679 23 - - 0.783 0.832 - - - -
D20S482 22 - - 0.545 0.666 - - - -
D21S102 23 - - 0.783 0.752 - - - -
D21S11 23 - - 0.870 0.763 - - - -
D21S2055 23 - - 0.739 0.861 - - - -
D22S1045 22 - - 0.636 0.599 - - - -
D2S1338 23 - - 1.000 0.837 - - - -
D2S1360 23 - - 0.783 0.849 - - - -
D2S1776 20 - - 0.900 0.735 - - - -
D2S427 23 - - 0.826 0.719 - - - -
D2S441 22 - - 0.636 0.675 - - - -
D3S1358 23 - - 0.783 0.685 - - - -
D3S1744 23 - - 0.826 0.812 - - - -
D3S2406 23 - - 0.870 0.887 - - - -
D3S3053 23 - - 0.478 0.631 - - - -
D3S4529 23 - - 0.478 0.527 - - - -
D3S4545 23 - - 0.783 0.772 - - - -
D4S2364 23 - - 0.478 0.445 - - - -
D4S2366 23 - - 0.783 0.760 - - - -
D4S2408 23 - - 0.696 0.663 - - - -
D5S1457 23 - - 0.870 0.772 - - - -
D5S2500 23 - - 0.870 0.787 - - - -
D5S818 23 - - 0.652 0.644 - - - -
D6S1017 23 - - 0.609 0.510 - - - -
D6S1027 21 - - 0.667 0.632 - - - -
D6S1043 23 - - 0.739 0.772 - - - -
D6S474 23 - - 0.826 0.629 - - - -
D7S1517 23 - - 0.870 0.751 - - - -
D7S2201 23 - - 0.565 0.532 - - - -
D7S820 22 - - 0.727 0.749 - - - -
D8S1132 23 - - 0.957 0.829 - - - -
D8S1179 23 - - 0.783 0.774 - - - -
D9S1118 23 - - 0.826 0.750 - - - -
D9S1120 23 - - 0.652 0.656 - - - -
D9S1122 23 - - 0.652 0.736 - - - -
D9S2157 23 - - 0.826 0.771 - - - -
F13A01 23 - - 0.739 0.787 - - - -
F13B 23 - - 0.565 0.668 - - - -
FESFPS 23 - - 0.522 0.634 - - - -
FGA 23 - - 0.652 0.871 - - - -
LPL 23 - - 0.652 0.624 - - - -
Penta_B 23 - - 0.870 0.871 - - - -
Penta_C 23 - - 0.739 0.681 - - - -
Penta_D 23 - - 0.609 0.793 - - - -
Penta_E 23 - - 0.783 0.859 - - - -
SE33 23 - - 0.739 0.917 - - - -
TH01 23 - - 0.652 0.698 - - - -
TPOX 23 - - 0.522 0.645 - - - -
vWA 22 - - 0.909 0.825 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
3.2 0.261
4 0.174
5 0.174 0.261 0.196
6 0.196 0.087 0.152
7 0.152 0.023 0.261 0.109 0.087 0.022 0.109 0.065
8 0.205 0.087 0.283 0.043 0.043 0.023 0.174 0.025 0.435 0.13 0.524 0.205 0.043 0.13 0.043 0.413
8.2 0.065
9 0.065 0.045 0.109 0.174 0.348 0.283 0.125 0.152 0.326 0.348 0.022 0.023 0.043 0.37 0.13 0.478 0.217 0.022 0.37 0.109
9.2 0.022
9.3 0.37
10 0.239 0.239 0.022 0.043 0.087 0.065 0.522 0.05 0.283 0.2 0.227 0.196 0.717 0.152 0.043 0.065 0.652 0.022 0.022 0.273 0.239 0.413 0.326 0.152 0.087 0.174 0.304 0.043 0.043
10.3 0.043
11 0.391 0.065 0.13 0.043 0.022 0.217 0.391 0.348 0.087 0.045 0.022 0.023 0.239 0.136 0.075 0.455 0.022 0.13 0.087 0.065 0.065 0.152 0.109 0.048 0.391 0.587 0.318 0.022 0.283 0.326 0.174 0.522 0.109 0.109 0.174 0.217 0.413
11.3 0.022 0.065
12 0.37 0.045 0.457 0.239 0.109 0.283 0.087 0.37 0.13 0.043 0.239 0.5 0.174 0.152 0.05 0.022 0.022 0.425 0.068 0.5 0.283 0.109 0.37 0.435 0.217 0.214 0.109 0.348 0.182 0.326 0.087 0.478 0.283 0.196 0.217 0.109 0.109 0.043 0.022
12.3 0.174 0.043
13 0.182 0.348 0.109 0.023 0.37 0.283 0.152 0.478 0.413 0.024 0.087 0.109 0.087 0.087 0.375 0.25 0.326 0.227 0.15 0.283 0.652 0.087 0.283 0.022 0.391 0.214 0.087 0.543 0.043 0.174 0.261 0.304 0.022 0.022 0.13 0.022 0.152 0.065 0.109
13.2 0.022 0.022
13.3 0.283 0.326
14 0.25 0.087 0.065 0.159 0.326 0.087 0.239 0.13 0.348 0.214 0.043 0.174 0.304 0.525 0.068 0.261 0.227 0.25 0.065 0.087 0.022 0.196 0.348 0.043 0.065 0.239 0.348 0.022 0.087 0.022 0.022 0.043 0.043 0.022 0.068
14.2 0.196
14.3 0.391 0.261
15 0.273 0.022 0.318 0.152 0.13 0.043 0.043 0.13 0.065 0.205 0.283 0.477 0.5 0.413 0.152 0.196 0.022 0.065 0.13 0.043 0.087 0.348 0.043 0.087 0.022 0.13 0.174 0.159
15.2 0.043
15.3 0.023 0.13
16 0.182 0.022 0.159 0.109 0.087 0.065 0.024 0.283 0.087 0.045 0.065 0.045 0.364 0.217 0.283 0.065 0.087 0.109 0.087 0.457 0.022 0.087 0.022 0.022 0.159
16.1 0.261
16.2 0.043
16.3 0.091
17 0.068 0.068 0.37 0.023 0.048 0.023 0.022 0.043 0.304 0.065 0.065 0.152 0.065 0.043 0.109 0.022 0.087 0.25
17.1 0.022
17.3 0.023 0.136
18 0.022 0.114 0.087 0.068 0.152 0.065 0.109 0.283 0.043 0.087 0.022 0.114
18.3 0.068 0.023
19 0.043 0.159 0.048 0.043 0.283 0.109 0.239 0.196 0.348 0.196 0.022 0.043 0.087 0.205
19.1 0.087
19.3 0.167
20 0.182 0.13 0.109 0.109 0.022 0.087 0.109 0.043 0.045
20.1 0.022
20.2 0.022
20.3 0.238
21 0.114 0.022 0.109 0.13 0.13 0.152
21.3 0.095
22 0.159 0.152 0.043 0.152 0.087 0.13 0.196
22.2 0.043 0.043
22.3 0.095
23 0.045 0.087 0.217 0.109 0.217 0.087 0.065
23.3 0.048
24 0.091 0.239 0.217 0.065 0.043 0.152 0.022
24.2 0.043 0.022
25 0.023 0.109 0.065 0.087 0.152 0.261 0.13
26 0.13 0.043 0.174 0.109 0.022 0.022 0.022
26.2 0.087
27 0.087 0.13 0.37
27.2 0.043
28 0.109 0.022
28.2 0.022
29 0.413
29.2 0.152
29.3 0.196
30 0.196 0.022 0.022
30.2 0.022 0.109
30.3 0.022 0.022
31 0.022 0.043
31.2 0.043 0.065
31.3 0.174
32 0.065 0.022
32.2 0.087
32.3 0.13
33 0.087 0.043
33.2 0.109
33.3 0.065
34 0.087 0.13
34.2 0.022
35 0.065 0.152
36 0.152
37 0.152
38 0.022
39 0.022
40 0.087
41 0.043

Locus histograms

CSF1PO

D10S1248

D10S1435

D10S2325

D11S1304

D11S4463

D12ATA63

D12S297

D12S391

D13S317

D14S1426

D14S1434

D15S822

D16S539

D17S1301

D17S974

D18S51

D19S433

D1S1627

D1S1656

D1S1677

D1S1679

D20S482

D21S102

D21S11

D21S2055

D22S1045

D2S1338

D2S1360

D2S1776

D2S427

D2S441

D3S1358

D3S1744

D3S2406