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pop.STR: Algeria (Mzab) - Mozabite

Study statistics

Loci
70 Autosomal STRs
Allele type
Length-based alleles
Sample size
up to 29
Location
Algeria (Mzab)
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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
License
Public domain
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

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Normalized frequencies
🔴 Failed

This check verifies that allele frequencies for each locus add up to 1 within a specified tolerance.

Ran with tolerance = 0.001. Max. deviation from 1: 0.0040 at D3S2406.

Misspelled locus names
🟢 Passed

Looks for common misspellings such as changing thee number 0 for the letter O.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 29 - - 0.759 0.697 - - - -
D10S1248 total frequency: 1.002 24 - - 0.667 0.760 - - - -
D10S1435 25 - - 0.720 0.754 - - - -
D10S2325 29 - - 0.793 0.858 - - - -
D11S1304 total frequency: 1.001 28 - - 0.679 0.687 - - - -
D11S4463 total frequency: 0.999 29 - - 0.828 0.778 - - - -
D12ATA63 25 - - 0.640 0.815 - - - -
D12S297 28 - - 0.857 0.831 - - - -
D12S391 24 - - 0.875 0.819 - - - -
D13S317 29 - - 0.793 0.706 - - - -
D14S1426 28 - - 0.607 0.770 - - - -
D14S1434 29 - - 0.655 0.654 - - - -
D15S822 total frequency: 1.001 24 - - 0.792 0.844 - - - -
D16S539 total frequency: 1.002 27 - - 0.778 0.799 - - - -
D17S1301 29 - - 0.448 0.613 - - - -
D17S974 25 - - 0.800 0.711 - - - -
D18S51 total frequency: 0.999 29 - - 0.828 0.844 - - - -
D19S433 total frequency: 0.999 29 - - 0.759 0.795 - - - -
D1S1627 total frequency: 1.001 27 - - 0.593 0.757 - - - -
D1S1656 total frequency: 1.002 24 - - 0.917 0.852 - - - -
D1S1677 29 - - 0.655 0.743 - - - -
D1S1679 total frequency: 0.999 28 - - 0.786 0.806 - - - -
D20S482 29 - - 0.621 0.697 - - - -
D21S102 28 - - 0.929 0.830 - - - -
D21S11 total frequency: 0.999 29 - - 0.862 0.839 - - - -
D21S2055 total frequency: 0.998 29 - - 0.862 0.879 - - - -
D22S1045 24 - - 0.750 0.592 - - - -
D2S1338 total frequency: 0.999 29 - - 0.897 0.807 - - - -
D2S1360 total frequency: 0.999 29 - - 0.897 0.841 - - - -
D2S1776 25 - - 0.640 0.790 - - - -
D2S427 total frequency: 0.999 26 - - 0.769 0.730 - - - -
D2S441 total frequency: 1.002 24 - - 0.708 0.722 - - - -
D3S1358 total frequency: 0.999 29 - - 0.828 0.754 - - - -
D3S1744 total frequency: 0.999 29 - - 0.828 0.810 - - - -
D3S2406 total frequency: 1.004 27 - - 0.815 0.829 - - - -
D3S3053 total frequency: 0.999 29 - - 0.759 0.702 - - - -
D3S4529 29 - - 0.828 0.724 - - - -
D3S4545 27 - - 0.889 0.830 - - - -
D4S2364 total frequency: 0.999 29 - - 0.862 0.606 - - - -
D4S2366 29 - - 0.793 0.772 - - - -
D4S2408 25 - - 0.760 0.722 - - - -
D5S1457 25 - - 0.720 0.694 - - - -
D5S2500 total frequency: 0.999 29 - - 0.828 0.810 - - - -
D5S818 total frequency: 0.999 29 - - 0.655 0.733 - - - -
D6S1017 28 - - 0.607 0.614 - - - -
D6S1027 total frequency: 0.997 29 - - 0.828 0.815 - - - -
D6S1043 total frequency: 0.998 29 - - 0.724 0.797 - - - -
D6S474 29 - - 0.690 0.731 - - - -
D7S1517 total frequency: 0.999 29 - - 0.862 0.872 - - - -
D7S2201 28 - - 0.464 0.572 - - - -
D7S820 29 - - 0.793 0.700 - - - -
D8S1132 total frequency: 0.998 29 - - 0.862 0.864 - - - -
D8S1179 total frequency: 0.999 29 - - 0.897 0.821 - - - -
D9S1118 total frequency: 1.003 27 - - 0.852 0.808 - - - -
D9S1120 total frequency: 0.998 29 - - 0.724 0.635 - - - -
D9S1122 29 - - 0.690 0.602 - - - -
D9S2157 total frequency: 1.001 26 - - 0.846 0.822 - - - -
F13A01 total frequency: 0.998 29 - - 0.828 0.759 - - - -
F13B total frequency: 0.999 29 - - 0.655 0.743 - - - -
FESFPS total frequency: 0.999 29 - - 0.621 0.702 - - - -
FGA total frequency: 0.999 29 - - 0.862 0.822 - - - -
LPL total frequency: 0.999 29 - - 0.828 0.741 - - - -
Penta_B total frequency: 1.003 27 - - 0.704 0.852 - - - -
Penta_C total frequency: 0.999 29 - - 0.793 0.713 - - - -
Penta_D 29 - - 0.897 0.876 - - - -
Penta_E 29 - - 0.759 0.867 - - - -
SE33 total frequency: 0.996 29 - - 0.862 0.916 - - - -
TH01 total frequency: 0.999 29 - - 0.724 0.789 - - - -
TPOX total frequency: 0.999 29 - - 0.690 0.732 - - - -
vWA total frequency: 0.999 29 - - 0.828 0.781 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
2.2 0.034
3.2 0.103
5 0.196 0.077 0.276 0.052
6 0.036 0.103 0.155 0.241 0.017
6.3 0.017
7 0.172 0.018 0.08 0.054 0.017 0.167 0.212 0.362 0.017 0.017 0.056 0.034 0.121 0.172 0.034
8 0.121 0.464 0.086 0.143 0.019 0.12 0.018 0.22 0.42 0.034 0.125 0.224 0.018 0.103 0.017 0.019 0.103 0.241 0.034 0.019 0.052 0.069 0.397
8.2 0.44
9 0.052 0.018 0.052 0.071 0.204 0.26 0.179 0.06 0.172 0.362 0.12 0.017 0.089 0.052 0.212 0.362 0.103 0.093 0.155 0.138 0.052 0.293 0.207
9.1 0.018
9.3 0.172
10 0.31 0.04 0.207 0.036 0.017 0.071 0.224 0.093 0.017 0.44 0.315 0.021 0.232 0.1 0.083 0.241 0.517 0.069 0.26 0.02 0.172 0.103 0.571 0.069 0.017 0.414 0.241 0.017 0.207 0.241 0.241 0.204 0.034 0.138 0.052 0.052 0.086
10.1 0.036
10.2 0.017
10.3 0.074
11 0.328 0.042 0.1 0.155 0.017 0.107 0.414 0.036 0.052 0.241 0.414 0.08 0.13 0.042 0.017 0.143 0.021 0.32 0.417 0.103 0.31 0.052 0.1 0.172 0.224 0.054 0.034 0.138 0.034 0.268 0.328 0.017 0.017 0.069 0.231 0.345 0.379 0.037 0.448 0.138 0.103 0.241
11.1 0.018
11.2 0.017
11.3 0.063 0.204
12 0.31 0.042 0.28 0.103 0.069 0.18 0.125 0.328 0.107 0.241 0.448 0.02 0.19 0.155 0.037 0.271 0.121 0.017 0.232 0.16 0.063 0.414 0.207 0.1 0.1 0.31 0.345 0.196 0.103 0.379 0.589 0.086 0.086 0.034 0.552 0.019 0.017 0.345 0.207 0.167 0.19 0.207 0.276 0.017
12.1 0.071
12.3 0.327 0.019
13 0.052 0.271 0.36 0.121 0.31 0.22 0.214 0.052 0.393 0.207 0.185 0.121 0.034 0.31 0.241 0.021 0.345 0.19 0.054 0.14 0.021 0.241 0.138 0.19 0.3 0.052 0.293 0.31 0.138 0.19 0.018 0.017 0.103 0.293 0.135 0.034 0.052 0.185 0.155 0.103 0.121 0.017
13.2 0.017
13.3 0.288 0.241
14 0.271 0.16 0.052 0.268 0.241 0.1 0.232 0.052 0.179 0.5 0.125 0.019 0.172 0.207 0.259 0.125 0.19 0.397 0.021 0.292 0.034 0.138 0.121 0.103 0.1 0.052 0.103 0.052 0.431 0.018 0.259 0.017 0.052 0.058 0.017 0.167 0.017 0.052 0.034 0.086 0.138
14.2 0.034
14.3 0.269 0.241
15 0.292 0.02 0.017 0.143 0.207 0.18 0.036 0.138 0.19 0.019 0.167 0.293 0.328 0.417 0.063 0.276 0.086 0.379 0.04 0.155 0.103 0.034 0.138 0.172 0.138 0.017 0.115 0.034 0.056 0.052 0.017 0.103 0.103
15.2 0.052 0.019
15.3 0.021 0.038 0.019
16 0.063 0.054 0.138 0.02 0.018 0.021 0.017 0.063 0.138 0.034 0.104 0.034 0.034 0.479 0.052 0.31 0.069 0.31 0.069 0.017 0.155 0.052 0.052 0.534 0.019 0.019 0.052 0.034 0.086 0.31
16.1 0.034
16.3 0.063
17 0.021 0.02 0.018 0.017 0.24 0.104 0.083 0.207 0.021 0.017 0.017 0.063 0.31 0.207 0.328 0.052 0.017 0.034 0.052 0.034 0.172 0.052 0.241 0.052 0.207
17.1 0.017
17.3 0.104
18 0.02 0.06 0.354 0.086 0.086 0.172 0.172 0.017 0.069 0.172 0.017 0.086 0.224
18.2 0.017
18.3 0.042
19 0.018 0.104 0.063 0.017 0.069 0.138 0.069 0.138 0.172 0.017 0.017 0.052 0.034 0.017
19.1 0.138
19.2 0.017
19.3 0.083 0.042
20 0.104 0.017 0.214 0.259 0.086 0.034 0.103 0.086 0.138 0.052 0.017 0.086
20.1 0.017
20.2 0.017
20.3 0.229
21 0.104 0.089 0.034 0.017 0.034 0.017 0.052 0.121 0.276 0.017
21.3 0.167
22 0.021 0.286 0.086 0.259 0.155 0.086 0.224
22.2 0.017
22.3 0.208
23 0.063 0.196 0.069 0.155 0.121 0.034 0.172
23.3 0.021
24 0.021 0.107 0.034 0.069 0.207 0.017 0.121
24.2 0.138
25 0.089 0.207 0.172 0.103 0.034 0.052
25.2 0.121
26 0.021 0.018 0.138 0.121 0.074 0.017 0.034
27 0.017 0.086 0.103 0.204 0.017
27.2 0.069
28 0.19 0.074
28.2 0.034
29 0.224 0.052 0.017 0.019
30 0.121 0.074
30.2 0.017 0.017
30.3 0.019
31 0.069 0.017 0.019
31.2 0.103 0.017
31.3 0.296
32 0.138 0.093
32.2 0.207
32.3 0.111
33 0.086 0.241
33.1 0.019
33.2 0.034 0.034
33.3 0.037
34 0.017 0.296
34.3 0.111
35 0.017 0.034 0.056
35.3 0.056
36 0.037
37 0.017 0.019
38 0.056
39.2 0.019
40 0.037
41 0.019
42 0.019

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