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pop.STR: Israel (Negev) - Bedouin

Study statistics

Loci
70 Autosomal STRs
Allele type
Length-based alleles
Sample size
up to 45
Location
Israel (Negev)
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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
License
Public domain
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

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Normalized frequencies
🔴 Failed

This check verifies that allele frequencies for each locus add up to 1 within a specified tolerance.

Ran with tolerance = 0.001. Max. deviation from 1: -0.0030 at D2S1360.

Misspelled locus names
🟢 Passed

Looks for common misspellings such as changing thee number 0 for the letter O.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 45 - - 0.822 0.710 - - - -
D10S1248 41 - - 0.732 0.741 - - - -
D10S1435 45 - - 0.756 0.737 - - - -
D10S2325 total frequency: 0.998 45 - - 0.822 0.837 - - - -
D11S1304 total frequency: 0.999 45 - - 0.644 0.757 - - - -
D11S4463 total frequency: 0.999 45 - - 0.689 0.735 - - - -
D12ATA63 total frequency: 0.999 45 - - 0.778 0.777 - - - -
D12S297 45 - - 0.800 0.838 - - - -
D12S391 total frequency: 0.999 41 - - 0.829 0.872 - - - -
D13S317 total frequency: 0.999 45 - - 0.711 0.719 - - - -
D14S1426 total frequency: 0.998 44 - - 0.795 0.734 - - - -
D14S1434 total frequency: 0.999 40 - - 0.725 0.718 - - - -
D15S822 43 - - 0.767 0.831 - - - -
D16S539 45 - - 0.689 0.761 - - - -
D17S1301 45 - - 0.622 0.639 - - - -
D17S974 45 - - 0.756 0.668 - - - -
D18S51 45 - - 0.778 0.890 - - - -
D19S433 total frequency: 0.999 45 - - 0.822 0.850 - - - -
D1S1627 43 - - 0.744 0.682 - - - -
D1S1656 41 - - 0.902 0.866 - - - -
D1S1677 45 - - 0.756 0.738 - - - -
D1S1679 45 - - 0.756 0.831 - - - -
D20S482 total frequency: 0.999 44 - - 0.636 0.663 - - - -
D21S102 total frequency: 0.999 45 - - 0.733 0.775 - - - -
D21S11 total frequency: 0.999 45 - - 0.778 0.825 - - - -
D21S2055 45 - - 0.822 0.903 - - - -
D22S1045 41 - - 0.732 0.731 - - - -
D2S1338 45 - - 0.733 0.809 - - - -
D2S1360 total frequency: 0.997 45 - - 0.889 0.851 - - - -
D2S1776 total frequency: 1.001 37 - - 0.784 0.776 - - - -
D2S427 45 - - 0.644 0.737 - - - -
D2S441 41 - - 0.683 0.699 - - - -
D3S1358 45 - - 0.733 0.746 - - - -
D3S1744 45 - - 0.667 0.770 - - - -
D3S2406 total frequency: 0.999 44 - - 0.818 0.898 - - - -
D3S3053 total frequency: 1.001 45 - - 0.667 0.677 - - - -
D3S4529 45 - - 0.733 0.781 - - - -
D3S4545 45 - - 0.756 0.789 - - - -
D4S2364 45 - - 0.422 0.530 - - - -
D4S2366 45 - - 0.733 0.786 - - - -
D4S2408 45 - - 0.600 0.757 - - - -
D5S1457 total frequency: 1.001 43 - - 0.698 0.730 - - - -
D5S2500 total frequency: 0.998 45 - - 0.800 0.839 - - - -
D5S818 total frequency: 0.999 45 - - 0.689 0.767 - - - -
D6S1017 total frequency: 1.001 45 - - 0.733 0.724 - - - -
D6S1027 total frequency: 0.999 45 - - 0.778 0.757 - - - -
D6S1043 total frequency: 0.999 45 - - 0.756 0.810 - - - -
D6S474 total frequency: 0.999 45 - - 0.822 0.757 - - - -
D7S1517 45 - - 0.733 0.872 - - - -
D7S2201 total frequency: 0.999 44 - - 0.614 0.613 - - - -
D7S820 total frequency: 0.999 45 - - 0.756 0.787 - - - -
D8S1132 total frequency: 1.001 45 - - 0.822 0.828 - - - -
D8S1179 45 - - 0.867 0.818 - - - -
D9S1118 total frequency: 1.001 35 - - 0.829 0.822 - - - -
D9S1120 total frequency: 0.999 45 - - 0.422 0.636 - - - -
D9S1122 total frequency: 0.999 45 - - 0.667 0.646 - - - -
D9S2157 total frequency: 0.999 44 - - 0.727 0.795 - - - -
F13A01 total frequency: 0.999 45 - - 0.689 0.778 - - - -
F13B 45 - - 0.756 0.736 - - - -
FESFPS total frequency: 0.999 45 - - 0.711 0.760 - - - -
FGA total frequency: 0.999 45 - - 0.756 0.837 - - - -
LPL 45 - - 0.711 0.745 - - - -
Penta_B total frequency: 0.999 43 - - 0.767 0.877 - - - -
Penta_C 45 - - 0.711 0.703 - - - -
Penta_D total frequency: 0.999 45 - - 0.778 0.849 - - - -
Penta_E 45 - - 0.911 0.897 - - - -
SE33 total frequency: 0.998 45 - - 0.889 0.946 - - - -
TH01 45 - - 0.756 0.771 - - - -
TPOX 45 - - 0.667 0.674 - - - -
vWA 45 - - 0.711 0.827 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
2.2 0.033
3.2 0.167
4 0.033
5 0.222 0.011 0.033 0.344 0.044 0.044
6 0.022 0.167 0.167 0.011 0.333 0.011
6.3 0.011
7 0.011 0.111 0.022 0.022 0.229 0.17 0.211 0.011 0.011 0.035 0.022 0.156 0.133
8 0.011 0.044 0.311 0.067 0.227 0.011 0.067 0.033 0.027 0.289 0.011 0.167 0.411 0.011 0.111 0.022 0.278 0.033 0.078 0.156 0.1 0.478
8.2 0.209
9 0.012 0.044 0.022 0.044 0.034 0.111 0.011 0.233 0.167 0.149 0.078 0.333 0.222 0.033 0.056 0.022 0.045 0.111 0.091 0.2 0.022 0.178 0.07 0.078 0.189 0.011 0.267 0.233
9.1 0.011
9.3 0.011 0.133
10 0.278 0.233 0.011 0.011 0.011 0.287 0.089 0.011 0.478 0.011 0.105 0.011 0.311 0.149 0.146 0.378 0.6 0.122 0.256 0.133 0.189 0.433 0.011 0.067 0.045 0.311 0.078 0.033 0.344 0.222 0.244 0.081 0.067 0.122 0.067 0.033 0.089
10.1 0.011
10.3 0.129
11 0.189 0.1 0.189 0.011 0.022 0.289 0.011 0.037 0.367 0.278 0.211 0.044 0.221 0.024 0.011 0.011 0.278 0.11 0.243 0.232 0.067 0.322 0.2 0.211 0.211 0.244 0.056 0.111 0.311 0.364 0.267 0.067 0.244 0.25 0.278 0.356 0.07 0.489 0.256 0.056 0.189
11.2 0.011
11.3 0.011 0.098 0.157
12 0.411 0.024 0.356 0.222 0.011 0.022 0.189 0.078 0.411 0.307 0.025 0.244 0.489 0.011 0.122 0.1 0.037 0.033 0.023 0.144 0.134 0.338 0.037 0.389 0.189 0.022 0.07 0.133 0.322 0.222 0.033 0.244 0.5 0.133 0.233 0.489 0.045 0.033 0.322 0.189 0.174 0.156 0.044 0.144 0.011
12.2 0.022
12.3 0.289 0.057
13 0.089 0.22 0.222 0.067 0.322 0.144 0.167 0.144 0.341 0.212 0.012 0.156 0.211 0.156 0.2 0.174 0.134 0.367 0.193 0.022 0.012 0.068 0.156 0.222 0.078 0.267 0.044 0.178 0.067 0.2 0.078 0.344 0.011 0.044 0.2 0.011 0.233 0.307 0.022 0.089 0.033 0.151 0.144 0.144 0.089 0.011
13.1 0.011 0.012
13.2 0.033 0.011
13.3 0.267 0.2
14 0.011 0.415 0.278 0.044 0.333 0.344 0.033 0.244 0.033 0.045 0.388 0.174 0.022 0.1 0.167 0.477 0.183 0.3 0.511 0.061 0.027 0.463 0.033 0.056 0.011 0.144 0.078 0.384 0.067 0.022 0.111 0.022 0.233 0.023 0.2 0.022 0.08 0.022 0.174 0.022 0.056 0.022 0.022 0.133
14.1 0.012
14.2 0.044
14.3 0.322 0.2
15 0.122 0.011 0.033 0.156 0.156 0.122 0.012 0.011 0.05 0.078 0.211 0.122 0.167 0.17 0.451 0.024 0.233 0.111 0.256 0.047 0.244 0.089 0.044 0.167 0.189 0.289 0.045 0.058 0.033 0.056 0.022 0.222
15.2 0.078
15.3 0.037 0.056 0.029
16 0.134 0.011 0.044 0.133 0.033 0.022 0.024 0.035 0.122 0.133 0.023 0.22 0.089 0.091 0.171 0.122 0.322 0.133 0.267 0.111 0.011 0.011 0.2 0.033 0.511 0.011 0.116 0.011 0.044 0.044 0.2
16.1 0.078
16.2 0.022
16.3 0.061 0.011 0.011
17 0.073 0.011 0.089 0.011 0.378 0.011 0.061 0.023 0.167 0.085 0.022 0.011 0.049 0.367 0.278 0.389 0.111 0.044 0.033 0.044 0.089 0.133 0.011 0.07 0.067 0.078 0.156
17.1 0.011
17.2 0.011
17.3 0.073
18 0.011 0.078 0.056 0.183 0.012 0.078 0.012 0.022 0.012 0.078 0.133 0.144 0.011 0.122 0.011 0.011 0.278 0.022 0.078 0.089 0.178
18.1 0.044
18.3 0.012
19 0.022 0.1 0.146 0.012 0.056 0.067 0.033 0.156 0.067 0.111 0.2 0.011 0.033 0.011 0.044 0.1
19.1 0.011 0.189
19.3 0.07 0.012
20 0.067 0.073 0.022 0.044 0.122 0.022 0.011 0.1 0.167 0.056 0.011 0.067 0.011
20.3 0.163
21 0.011 0.122 0.011 0.156 0.022 0.144 0.078 0.078 0.133 0.011
21.2 0.011 0.033
21.3 0.291
22 0.098 0.3 0.056 0.2 0.1 0.089 0.2
22.2 0.022
22.3 0.116
23 0.183 0.178 0.067 0.222 0.167 0.067 0.211
23.2 0.067
23.3 0.081 0.022
24 0.073 0.111 0.056 0.1 0.111 0.133 0.022 0.222
24.3 0.012
25 0.012 0.056 0.078 0.033 0.144 0.2 0.011 0.078
25.2 0.033
26 0.022 0.056 0.044 0.1 0.056 0.011
26.2 0.056
27 0.022 0.011 0.033 0.356 0.022
27.2 0.078
28 0.111 0.033 0.067 0.011 0.022
28.2 0.056
29 0.189 0.044 0.022 0.011
29.2 0.022
30 0.3 0.033 0.011 0.011 0.011
30.2 0.022 0.078
30.3 0.122
31 0.1 0.089 0.011 0.023
31.2 0.1 0.044
31.3 0.211
32 0.122 0.091
32.2 0.122 0.033
32.3 0.1
33 0.1 0.091 0.011
33.2 0.033
33.3 0.022
34 0.067 0.034
35 0.011 0.091 0.011
35.3 0.022
36 0.011 0.045 0.011
37 0.136
38 0.125
39 0.08
39.1 0.011
40 0.102
41 0.148
42 0.011

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