👩‍🔬 leapdna

← Back to Explore

pop.STR: Kenya - Bantu N.E.

Study statistics

Loci
70 Autosomal STRs
Allele type
Length-based alleles
Sample size
up to 11

Download

Caution! Some automated checks did not pass for this study.

Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
License
Public domain
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

leapdna checks

New! Learn more about automated checks

Normalized frequencies
🔴 Failed

This check verifies that allele frequencies for each locus add up to 1 within a specified tolerance.

Ran with tolerance = 0.001. Max. deviation from 1: -0.0040 at SE33.

Misspelled locus names
🟢 Passed

Looks for common misspellings such as changing thee number 0 for the letter O.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 11 - - 0.727 0.789 - - - -
D10S1248 total frequency: 0.999 11 - - 0.636 0.711 - - - -
D10S1435 total frequency: 0.999 11 - - 0.818 0.711 - - - -
D10S2325 11 - - 0.818 0.781 - - - -
D11S1304 total frequency: 0.998 11 - - 0.909 0.864 - - - -
D11S4463 total frequency: 0.999 11 - - 0.727 0.777 - - - -
D12ATA63 10 - - 0.800 0.720 - - - -
D12S297 11 - - 0.727 0.789 - - - -
D12S391 total frequency: 0.999 11 - - 0.727 0.793 - - - -
D13S317 total frequency: 0.999 11 - - 0.818 0.777 - - - -
D14S1426 10 - - 0.600 0.795 - - - -
D14S1434 11 - - 1.000 0.694 - - - -
D15S822 10 - - 0.800 0.830 - - - -
D16S539 11 - - 1.000 0.798 - - - -
D17S1301 total frequency: 0.999 11 - - 0.727 0.579 - - - -
D17S974 total frequency: 0.999 11 - - 0.909 0.810 - - - -
D18S51 11 - - 0.909 0.839 - - - -
D19S433 total frequency: 0.999 11 - - 1.000 0.843 - - - -
D1S1627 10 - - 0.700 0.660 - - - -
D1S1656 total frequency: 0.997 11 - - 0.818 0.826 - - - -
D1S1677 10 - - 0.400 0.755 - - - -
D1S1679 10 - - 1.000 0.810 - - - -
D20S482 11 - - 0.909 0.682 - - - -
D21S102 total frequency: 0.999 11 - - 0.636 0.702 - - - -
D21S11 total frequency: 0.998 11 - - 0.818 0.814 - - - -
D21S2055 total frequency: 0.999 11 - - 0.818 0.843 - - - -
D22S1045 total frequency: 0.999 11 - - 0.818 0.802 - - - -
D2S1338 total frequency: 0.999 11 - - 1.000 0.843 - - - -
D2S1360 total frequency: 0.999 11 - - 0.818 0.818 - - - -
D2S1776 total frequency: 0.999 11 - - 1.000 0.777 - - - -
D2S427 total frequency: 0.999 11 - - 0.727 0.719 - - - -
D2S441 11 - - 0.455 0.566 - - - -
D3S1358 11 - - 0.636 0.674 - - - -
D3S1744 total frequency: 0.999 11 - - 0.727 0.694 - - - -
D3S2406 10 - - 0.600 0.855 - - - -
D3S3053 total frequency: 0.999 11 - - 0.727 0.727 - - - -
D3S4529 total frequency: 0.999 11 - - 0.818 0.769 - - - -
D3S4545 10 - - 0.900 0.815 - - - -
D4S2364 11 - - 0.273 0.512 - - - -
D4S2366 total frequency: 0.999 11 - - 0.727 0.727 - - - -
D4S2408 total frequency: 0.999 11 - - 0.909 0.752 - - - -
D5S1457 10 - - 0.700 0.740 - - - -
D5S2500 11 - - 0.818 0.764 - - - -
D5S818 total frequency: 0.998 11 - - 0.727 0.645 - - - -
D6S1017 11 - - 0.818 0.731 - - - -
D6S1027 11 - - 0.818 0.860 - - - -
D6S1043 total frequency: 0.998 11 - - 0.909 0.814 - - - -
D6S474 11 - - 0.818 0.740 - - - -
D7S1517 total frequency: 0.998 11 - - 0.909 0.839 - - - -
D7S2201 total frequency: 0.998 11 - - 0.727 0.707 - - - -
D7S820 total frequency: 0.999 11 - - 0.636 0.686 - - - -
D8S1132 total frequency: 0.999 11 - - 1.000 0.868 - - - -
D8S1179 total frequency: 0.999 11 - - 0.727 0.678 - - - -
D9S1118 total frequency: 0.997 11 - - 0.818 0.851 - - - -
D9S1120 total frequency: 0.998 11 - - 0.636 0.674 - - - -
D9S1122 total frequency: 0.999 11 - - 0.636 0.628 - - - -
D9S2157 11 - - 0.818 0.731 - - - -
F13A01 total frequency: 0.999 11 - - 0.636 0.760 - - - -
F13B total frequency: 0.999 11 - - 0.455 0.736 - - - -
FESFPS total frequency: 0.999 11 - - 0.636 0.649 - - - -
FGA total frequency: 0.998 11 - - 1.000 0.880 - - - -
LPL total frequency: 0.999 11 - - 1.000 0.777 - - - -
Penta_B total frequency: 0.999 11 - - 0.636 0.893 - - - -
Penta_C total frequency: 0.999 11 - - 0.455 0.752 - - - -
Penta_D 11 - - 0.364 0.748 - - - -
Penta_E total frequency: 1.001 9 - - 0.667 0.728 - - - -
SE33 total frequency: 0.996 11 - - 1.000 0.872 - - - -
TH01 11 - - 0.818 0.657 - - - -
TPOX total frequency: 0.998 11 - - 0.636 0.690 - - - -
vWA total frequency: 0.998 11 - - 0.818 0.789 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
2.2 0.455
3.2 0.318 0.091
4 0.091
5 0.273 0.409 0.273 0.045
6 0.182 0.045 0.409 0.045 0.091 0.136
7 0.045 0.091 0.045 0.05 0.045 0.227 0.091 0.045 0.182 0.227 0.227 0.091 0.091 0.056 0.273
8 0.136 0.182 0.091 0.05 0.045 0.182 0.091 0.136 0.136 0.409 0.091 0.227 0.045 0.136 0.045 0.091 0.045 0.091 0.278 0.5 0.136
8.2 0.35
9 0.091 0.136 0.045 0.182 0.227 0.045 0.091 0.045 0.273 0.045 0.136 0.182 0.045 0.045 0.136 0.045 0.091 0.091 0.045 0.045 0.091 0.5
9.1 0.045
9.2 0.045
9.3 0.045
10 0.273 0.182 0.091 0.045 0.182 0.045 0.227 0.045 0.1 0.273 0.227 0.136 0.636 0.409 0.318 0.273 0.182 0.182 0.136 0.455 0.045 0.227 0.091 0.182 0.273 0.136 0.091 0.091 0.136
10.1 0.045
10.3 0.045 0.136
11 0.182 0.045 0.045 0.091 0.045 0.05 0.091 0.182 0.1 0.273 0.182 0.045 0.2 0.045 0.455 0.136 0.318 0.273 0.182 0.091 0.182 0.318 0.364 0.136 0.091 0.136 0.409 0.227 0.045 0.045 0.045 0.409 0.545 0.136 0.182 0.318 0.278 0.045
11.1 0.045
11.2 0.227
11.3 0.045 0.045 0.045
12 0.273 0.136 0.455 0.364 0.091 0.15 0.136 0.273 0.25 0.091 0.05 0.273 0.591 0.136 0.091 0.091 0.1 0.045 0.091 0.227 0.091 0.409 0.136 0.091 0.1 0.091 0.545 0.091 0.091 0.318 0.318 0.045 0.091 0.045 0.5 0.091 0.318 0.045 0.318 0.091 0.045
12.2 0.045
12.3 0.273 0.182
13 0.136 0.455 0.227 0.045 0.182 0.273 0.318 0.25 0.364 0.1 0.091 0.227 0.091 0.2 0.1 0.273 0.045 0.045 0.045 0.227 0.091 0.25 0.045 0.136 0.091 0.182 0.091 0.364 0.045 0.318 0.091 0.136 0.091 0.182 0.333
13.2 0.182
13.3 0.182 0.091
14 0.227 0.136 0.136 0.318 0.3 0.182 0.25 0.364 0.25 0.091 0.136 0.091 0.273 0.5 0.273 0.35 0.455 0.136 0.591 0.045 0.136 0.318 0.25 0.091 0.182 0.045 0.045 0.455 0.045 0.136 0.045 0.091 0.056 0.045 0.045
14.2 0.136
14.3 0.045 0.045 0.273
15 0.091 0.045 0.273 0.4 0.05 0.045 0.182 0.091 0.227 0.3 0.182 0.227 0.318 0.045 0.227 0.05 0.091 0.045 0.091 0.136 0.318 0.227 0.091 0.091 0.136
15.3 0.045 0.045
16 0.045 0.045 0.136 0.045 0.05 0.091 0.1 0.227 0.136 0.1 0.045 0.273 0.455 0.045 0.227 0.045 0.045 0.273 0.136 0.045 0.5 0.091 0.273 0.318
16.3 0.136
17 0.091 0.136 0.045 0.05 0.136 0.05 0.136 0.045 0.05 0.182 0.182 0.091 0.455 0.136 0.136 0.045 0.091 0.136 0.045 0.182
17.3 0.045
18 0.045 0.364 0.182 0.045 0.091 0.273 0.182 0.045 0.091 0.045 0.045 0.136 0.227
18.1 0.05
19 0.182 0.091 0.1 0.136 0.045 0.045 0.091 0.182 0.091 0.045
19.2 0.045
20 0.091 0.182 0.045 0.05 0.045 0.227 0.182 0.045 0.045
20.3 0.2
21 0.045 0.15 0.227 0.227 0.136 0.091 0.045
21.2 0.045
21.3 0.2
22 0.045 0.2 0.091 0.136 0.05 0.045 0.091 0.182 0.045
22.3 0.05
23 0.045 0.3 0.091 0.136 0.091 0.045 0.182
24 0.15 0.045 0.273 0.045 0.091
25 0.05 0.045 0.182 0.182 0.136
26 0.045 0.091 0.045 0.15 0.091
26.2 0.091
27 0.045 0.182 0.35
27.2 0.045
28 0.227 0.05 0.045
28.2 0.045
29 0.227 0.045 0.045 0.045
29.2 0.045
29.3 0.1
30 0.227 0.045 0.1
30.2 0.045
30.3 0.1
31 0.136 0.091 0.3 0.05 0.045
31.2 0.045
32 0.273 0.1
32.1 0.1
32.2 0.091
32.3 0.1
33 0.136 0.05
33.1 0.05
34 0.182 0.05
34.1 0.1
35 0.045 0.091 0.05
36 0.05
37 0.05

Download CSV or select another format