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pop.STR: Namibia - San

Study statistics

Loci
70 Autosomal STRs
Allele type
Length-based alleles
Sample size
6

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
License
Public domain
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

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Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 6 - - 0.833 0.764 - - - -
D10S1248 6 - - 0.667 0.792 - - - -
D10S1435 6 - - 0.833 0.722 - - - -
D10S2325 6 - - 1.000 0.625 - - - -
D11S1304 6 - - 0.833 0.819 - - - -
D11S4463 6 - - 0.500 0.722 - - - -
D12ATA63 6 - - 1.000 0.722 - - - -
D12S297 6 - - 0.833 0.764 - - - -
D12S391 6 - - 1.000 0.778 - - - -
D13S317 6 - - 0.667 0.597 - - - -
D14S1426 6 - - 0.667 0.639 - - - -
D14S1434 6 - - 0.500 0.736 - - - -
D15S822 5 - - 1.000 0.840 - - - -
D16S539 6 - - 0.667 0.736 - - - -
D17S1301 6 - - 0.500 0.681 - - - -
D17S974 6 - - 0.833 0.736 - - - -
D18S51 6 - - 0.833 0.750 - - - -
D19S433 6 - - 0.667 0.708 - - - -
D1S1627 6 - - 0.500 0.694 - - - -
D1S1656 6 - - 1.000 0.792 - - - -
D1S1677 6 - - 0.500 0.528 - - - -
D1S1679 6 - - 0.667 0.819 - - - -
D20S482 6 - - 0.667 0.597 - - - -
D21S102 6 - - 0.167 0.625 - - - -
D21S11 6 - - 1.000 0.875 - - - -
D21S2055 6 - - 0.500 0.722 - - - -
D22S1045 6 - - 1.000 0.750 - - - -
D2S1338 6 - - 0.833 0.722 - - - -
D2S1360 6 - - 0.833 0.806 - - - -
D2S1776 6 - - 0.833 0.681 - - - -
D2S427 6 - - 0.833 0.653 - - - -
D2S441 6 - - 0.500 0.681 - - - -
D3S1358 6 - - 0.833 0.694 - - - -
D3S1744 6 - - 0.667 0.708 - - - -
D3S2406 6 - - 0.667 0.694 - - - -
D3S3053 6 - - 0.833 0.639 - - - -
D3S4529 6 - - 0.667 0.750 - - - -
D3S4545 6 - - 0.667 0.778 - - - -
D4S2364 6 - - 0.000 0.000 - - - -
D4S2366 6 - - 0.667 0.583 - - - -
D4S2408 6 - - 0.667 0.694 - - - -
D5S1457 5 - - 0.600 0.760 - - - -
D5S2500 6 - - 1.000 0.792 - - - -
D5S818 6 - - 0.667 0.764 - - - -
D6S1017 6 - - 0.667 0.583 - - - -
D6S1027 6 - - 0.667 0.667 - - - -
D6S1043 6 - - 1.000 0.806 - - - -
D6S474 6 - - 0.833 0.819 - - - -
D7S1517 6 - - 1.000 0.875 - - - -
D7S2201 6 - - 0.667 0.708 - - - -
D7S820 6 - - 1.000 0.778 - - - -
D8S1132 6 - - 0.833 0.764 - - - -
D8S1179 6 - - 0.833 0.667 - - - -
D9S1118 6 - - 0.833 0.792 - - - -
D9S1120 6 - - 0.833 0.708 - - - -
D9S1122 6 - - 0.500 0.514 - - - -
D9S2157 6 - - 0.833 0.722 - - - -
F13A01 6 - - 0.667 0.583 - - - -
F13B 6 - - 0.667 0.569 - - - -
FESFPS 6 - - 0.333 0.653 - - - -
FGA 6 - - 1.000 0.792 - - - -
LPL 6 - - 0.333 0.667 - - - -
Penta_B 6 - - 0.667 0.778 - - - -
Penta_C 6 - - 0.667 0.514 - - - -
Penta_D 6 - - 0.833 0.792 - - - -
Penta_E 6 - - 0.833 0.875 - - - -
SE33 5 - - 1.000 0.860 - - - -
TH01 6 - - 0.500 0.417 - - - -
TPOX 6 - - 0.833 0.736 - - - -
vWA 6 - - 0.833 0.750 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
3.2 0.083
5 0.25 0.083 0.583 0.083
6 0.167 0.083 0.083 0.5 0.083
7 0.167 0.25 0.583 0.083 0.25 0.25 0.083 0.333
8 0.083 0.25 0.083 0.25 0.083 0.25 0.083 0.083 0.083 0.333 0.083 0.333 0.167 0.75 0.167
8.2 0.4
9 0.5 0.167 0.25 0.083 0.167 0.25 0.083 0.167 0.167 0.083 0.417 0.083 0.333 0.667 0.167 0.083 0.25
9.3 0.5
10 0.333 0.083 0.083 0.167 0.25 0.167 0.333 0.417 0.083 0.417 0.417 1.0 0.083 0.083 0.167 0.167 0.5 0.25 0.25 0.25 0.417 0.333 0.167 0.167 0.25 0.083 0.083 0.25
10.3 0.25 0.083
11 0.083 0.25 0.333 0.083 0.333 0.333 0.25 0.083 0.25 0.083 0.5 0.167 0.333 0.167 0.083 0.417 0.1 0.333 0.167 0.25 0.167 0.333 0.083 0.083 0.417 0.083 0.083 0.167 0.167
11.2 0.25
11.3 0.333 0.083
12 0.25 0.083 0.167 0.083 0.333 0.167 0.167 0.583 0.417 0.417 0.167 0.333 0.167 0.333 0.25 0.083 0.167 0.417 0.583 0.25 0.083 0.25 0.083 0.25 0.25 0.083 0.417 0.083 0.25 0.167 0.25 0.333 0.333 0.167 0.083
12.1 0.25
12.2 0.083
12.3 0.083 0.417 0.25
13 0.167 0.083 0.167 0.417 0.333 0.417 0.333 0.1 0.25 0.167 0.417 0.083 0.25 0.083 0.167 0.417 0.333 0.2 0.083 0.333 0.167 0.083 0.667 0.25 0.083
13.3 0.083 0.167 0.083
14 0.167 0.083 0.333 0.083 0.167 0.167 0.083 0.25 0.1 0.083 0.083 0.083 0.583 0.083 0.083 0.083 0.25 0.1 0.083 0.083 0.083 0.25 0.083 0.083 0.083 0.083
14.3 0.083
15 0.333 0.083 0.083 0.167 0.25 0.167 0.25 0.667 0.167 0.167 0.083 0.417 0.083 0.25 0.1 0.167 0.25 0.5 0.167 0.083 0.2 0.083
15.2 0.1
16 0.167 0.083 0.083 0.167 0.3 0.083 0.25 0.083 0.333 0.083 0.1 0.167 0.083 0.083 0.417 0.167 0.083 0.167 0.417
16.1 0.083
17 0.417 0.333 0.083 0.083 0.083 0.167 0.083 0.333 0.083 0.083 0.083 0.167
17.3 0.083
18 0.25 0.333 0.417 0.083 0.333 0.083 0.083 0.333 0.25 0.083 0.2 0.167
19 0.167 0.1 0.083 0.25 0.083 0.25 0.1 0.167
19.3 0.1
20 0.083 0.083 0.083 0.083 0.167 0.25 0.167 0.083 0.167 0.083 0.083
20.3 0.1
21 0.25 0.167 0.083 0.167
21.3 0.1
22 0.167 0.083 0.333 0.167 0.167 0.1
23 0.083 0.25 0.083 0.167
23.3 0.1
24 0.333
25 0.083 0.083 0.167 0.167
25.2 0.1
26 0.083 0.083 0.083
26.2 0.1
27 0.167 0.083 0.333 0.083
27.2 0.1
28 0.083 0.083 0.083
29 0.167 0.417
30 0.083 0.25 0.25
31 0.083 0.083 0.083 0.167 0.167
31.2 0.167
31.3 0.083
32 0.083
32.2 0.167
33 0.083
34 0.083 0.333 0.083
35 0.417
36.1 0.083
37 0.083 0.083

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