👩‍🔬 leapdna

← Back to Explore

pop.STR: Nigeria - Yoruba

Study statistics

Loci
70 Autosomal STRs
Allele type
Length-based alleles
Sample size
up to 22

Download

Caution! Some automated checks did not pass for this study.

Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
License
Public domain
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

leapdna checks

New! Learn more about automated checks

Normalized frequencies
🔴 Failed

This check verifies that allele frequencies for each locus add up to 1 within a specified tolerance.

Ran with tolerance = 0.001. Max. deviation from 1: 0.0020 at D7S820.

Misspelled locus names
🟢 Passed

Looks for common misspellings such as changing thee number 0 for the letter O.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 22 - - 0.773 0.788 - - - -
D10S1248 22 - - 0.909 0.832 - - - -
D10S1435 total frequency: 0.999 22 - - 0.727 0.695 - - - -
D10S2325 total frequency: 1.001 22 - - 0.818 0.863 - - - -
D11S1304 total frequency: 0.999 22 - - 0.818 0.845 - - - -
D11S4463 total frequency: 0.999 22 - - 0.909 0.777 - - - -
D12ATA63 total frequency: 0.999 22 - - 0.864 0.763 - - - -
D12S297 total frequency: 1.001 22 - - 0.864 0.718 - - - -
D12S391 22 - - 0.864 0.792 - - - -
D13S317 22 - - 0.727 0.569 - - - -
D14S1426 22 - - 0.818 0.804 - - - -
D14S1434 total frequency: 0.999 22 - - 0.591 0.709 - - - -
D15S822 total frequency: 0.999 18 - - 0.833 0.818 - - - -
D16S539 total frequency: 1.001 22 - - 0.727 0.765 - - - -
D17S1301 21 - - 0.571 0.557 - - - -
D17S974 22 - - 0.727 0.761 - - - -
D18S51 total frequency: 0.999 22 - - 0.909 0.845 - - - -
D19S433 total frequency: 0.999 22 - - 0.955 0.857 - - - -
D1S1627 22 - - 0.727 0.798 - - - -
D1S1656 22 - - 0.727 0.806 - - - -
D1S1677 20 - - 0.850 0.755 - - - -
D1S1679 total frequency: 0.999 22 - - 0.909 0.783 - - - -
D20S482 22 - - 0.818 0.655 - - - -
D21S102 22 - - 0.909 0.814 - - - -
D21S11 total frequency: 0.999 22 - - 0.909 0.870 - - - -
D21S2055 22 - - 0.909 0.857 - - - -
D22S1045 total frequency: 1.001 22 - - 0.727 0.837 - - - -
D2S1338 22 - - 0.818 0.860 - - - -
D2S1360 22 - - 0.864 0.824 - - - -
D2S1776 20 - - 0.750 0.743 - - - -
D2S427 total frequency: 0.999 22 - - 0.864 0.802 - - - -
D2S441 total frequency: 1.001 22 - - 0.818 0.790 - - - -
D3S1358 22 - - 0.864 0.725 - - - -
D3S1744 22 - - 0.864 0.768 - - - -
D3S2406 22 - - 0.773 0.875 - - - -
D3S3053 22 - - 0.864 0.711 - - - -
D3S4529 22 - - 0.773 0.714 - - - -
D3S4545 total frequency: 0.999 22 - - 0.909 0.836 - - - -
D4S2364 22 - - 0.500 0.427 - - - -
D4S2366 22 - - 0.727 0.740 - - - -
D4S2408 22 - - 0.773 0.739 - - - -
D5S1457 20 - - 0.750 0.741 - - - -
D5S2500 total frequency: 0.999 22 - - 0.818 0.837 - - - -
D5S818 22 - - 0.727 0.781 - - - -
D6S1017 22 - - 0.773 0.764 - - - -
D6S1027 22 - - 0.864 0.852 - - - -
D6S1043 22 - - 0.773 0.823 - - - -
D6S474 22 - - 0.727 0.746 - - - -
D7S1517 22 - - 0.955 0.838 - - - -
D7S2201 total frequency: 0.999 22 - - 0.727 0.714 - - - -
D7S820 total frequency: 1.002 22 - - 0.773 0.728 - - - -
D8S1132 22 - - 0.773 0.861 - - - -
D8S1179 22 - - 0.818 0.805 - - - -
D9S1118 21 - - 0.810 0.840 - - - -
D9S1120 total frequency: 0.999 22 - - 0.636 0.695 - - - -
D9S1122 22 - - 0.636 0.674 - - - -
D9S2157 total frequency: 0.998 22 - - 0.864 0.851 - - - -
F13A01 22 - - 0.682 0.818 - - - -
F13B 22 - - 0.818 0.681 - - - -
FESFPS total frequency: 0.999 21 - - 0.524 0.687 - - - -
FGA total frequency: 0.999 22 - - 1.000 0.854 - - - -
LPL 22 - - 0.682 0.693 - - - -
Penta_B total frequency: 0.999 22 - - 0.591 0.835 - - - -
Penta_C 22 - - 0.773 0.810 - - - -
Penta_D total frequency: 1.001 22 - - 0.773 0.851 - - - -
Penta_E 21 - - 0.762 0.895 - - - -
SE33 total frequency: 0.998 22 - - 0.909 0.918 - - - -
TH01 total frequency: 0.999 22 - - 0.773 0.716 - - - -
TPOX 22 - - 0.864 0.753 - - - -
vWA total frequency: 0.999 22 - - 0.682 0.792 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
2.2 0.091
3.2 0.091
4 0.068
5 0.455 0.341 0.318 0.045 0.023 0.071
6 0.182 0.273 0.045 0.114 0.5 0.023 0.136 0.091
7 0.068 0.114 0.045 0.023 0.341 0.136 0.023 0.071 0.045 0.182 0.136 0.024 0.136 0.023 0.023 0.048 0.386 0.023
8 0.068 0.091 0.091 0.114 0.023 0.136 0.023 0.023 0.091 0.136 0.273 0.205 0.068 0.205 0.143 0.136 0.114 0.071 0.114 0.023 0.25 0.119 0.318 0.295
8.2 0.175
9 0.068 0.159 0.045 0.159 0.205 0.364 0.091 0.225 0.205 0.091 0.159 0.045 0.114 0.159 0.091 0.091 0.024 0.045 0.182 0.114 0.227 0.205 0.159 0.048 0.114 0.25
9.1 0.068
9.2 0.025
9.3 0.045
10 0.25 0.182 0.045 0.341 0.091 0.227 0.159 0.023 0.023 0.273 0.091 0.075 0.045 0.159 0.727 0.409 0.364 0.045 0.068 0.159 0.205 0.136 0.432 0.023 0.024 0.136 0.068 0.214 0.409 0.25 0.045 0.091 0.071 0.023
10.1 0.045
10.3 0.159
11 0.182 0.045 0.045 0.068 0.023 0.136 0.182 0.045 0.25 0.182 0.023 0.091 0.114 0.023 0.023 0.273 0.182 0.275 0.341 0.159 0.045 0.136 0.295 0.025 0.205 0.205 0.023 0.091 0.409 0.182 0.091 0.048 0.205 0.25 0.452 0.091 0.114 0.295 0.159 0.071 0.295
11.1 0.045
11.2 0.25
11.3 0.045 0.114 0.023 0.024
12 0.318 0.136 0.432 0.136 0.091 0.068 0.023 0.614 0.25 0.068 0.083 0.341 0.524 0.045 0.091 0.136 0.205 0.068 0.025 0.068 0.136 0.045 0.35 0.182 0.023 0.432 0.023 0.045 0.091 0.225 0.182 0.318 0.068 0.091 0.295 0.295 0.023 0.159 0.409 0.159 0.238 0.341 0.205 0.114 0.143 0.023
12.1 0.023
12.2 0.045
12.3 0.159 0.143
13 0.023 0.205 0.25 0.023 0.023 0.273 0.136 0.205 0.114 0.273 0.136 0.068 0.405 0.023 0.227 0.182 0.205 0.175 0.136 0.023 0.05 0.045 0.023 0.227 0.023 0.023 0.4 0.045 0.227 0.045 0.091 0.182 0.386 0.182 0.341 0.045 0.023 0.045 0.045 0.114 0.068 0.19
13.1 0.023
13.2 0.045
13.3 0.091 0.19
14 0.023 0.25 0.227 0.023 0.159 0.318 0.182 0.159 0.091 0.136 0.386 0.361 0.023 0.071 0.045 0.205 0.295 0.341 0.325 0.545 0.114 0.025 0.205 0.159 0.045 0.023 0.273 0.023 0.125 0.114 0.023 0.045 0.068 0.205 0.023 0.273 0.023 0.023 0.136 0.045 0.023 0.045 0.023 0.095 0.068 0.023
14.2 0.091
14.3 0.136 0.262
15 0.159 0.045 0.068 0.136 0.409 0.045 0.068 0.023 0.136 0.023 0.045 0.136 0.3 0.136 0.136 0.023 0.273 0.091 0.159 0.023 0.025 0.25 0.023 0.023 0.114 0.045 0.227 0.318 0.023 0.114 0.023 0.023 0.048 0.045 0.159
15.2 0.068
15.3 0.023 0.071
16 0.114 0.023 0.136 0.045 0.091 0.023 0.068 0.023 0.083 0.159 0.068 0.125 0.068 0.114 0.159 0.386 0.091 0.409 0.068 0.023 0.023 0.023 0.205 0.068 0.045 0.386 0.068 0.045 0.024 0.045 0.318
16.2 0.068
16.3 0.068
17 0.068 0.136 0.045 0.091 0.083 0.273 0.023 0.05 0.273 0.068 0.023 0.159 0.409 0.136 0.045 0.068 0.091 0.023 0.25 0.227 0.048 0.045 0.136
18 0.023 0.045 0.205 0.028 0.023 0.023 0.023 0.182 0.182 0.114 0.045 0.023 0.114 0.227
18.3 0.045
19 0.068 0.364 0.028 0.136 0.023 0.023 0.045 0.091 0.068 0.023 0.136 0.091 0.024 0.136 0.091
19.3 0.083
20 0.023 0.023 0.114 0.045 0.045 0.114 0.068 0.023 0.159 0.091 0.045 0.136 0.045
20.3 0.056
21 0.068 0.114 0.114 0.023 0.25 0.114 0.068 0.045
21.2 0.023
21.3 0.111
22 0.023 0.318 0.25 0.25 0.068 0.045 0.068 0.182 0.023
22.3 0.083
23 0.045 0.295 0.023 0.114 0.182 0.182 0.114 0.091
24 0.023 0.091 0.045 0.182 0.159 0.182
24.2 0.045
25 0.045 0.159 0.091 0.227
25.2 0.023
26 0.045 0.091 0.068 0.136 0.045 0.068 0.045
26.2 0.068
27 0.091 0.045 0.318 0.045
27.2 0.068
28 0.227 0.023
28.2 0.068
29 0.114 0.136 0.045
29.2 0.023
29.3 0.023
30 0.136 0.045 0.045
30.2 0.023 0.023 0.023
30.3 0.068
31 0.136 0.205 0.159 0.045
31.2 0.045 0.023
31.3 0.182
32 0.205 0.114 0.023
32.2 0.114
32.3 0.068
33 0.023 0.136 0.205
33.2 0.045
33.3 0.091
34 0.091 0.159
35 0.045 0.023 0.091
36 0.023
37 0.068
38 0.045 0.023
40 0.045
41 0.023

Download CSV or select another format