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pop.STR: Pakistan - Burusho

Study statistics

Loci
70 Autosomal STRs
Allele type
Length-based alleles
Sample size
up to 25

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
License
Public domain
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

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Normalized frequencies
🔴 Failed

This check verifies that allele frequencies for each locus add up to 1 within a specified tolerance.

Ran with tolerance = 0.001. Max. deviation from 1: 0.0020 at D12S391.

Misspelled locus names
🟢 Passed

Looks for common misspellings such as changing thee number 0 for the letter O.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 25 - - 0.800 0.696 - - - -
D10S1248 23 - - 0.696 0.746 - - - -
D10S1435 25 - - 0.760 0.692 - - - -
D10S2325 25 - - 0.880 0.854 - - - -
D11S1304 25 - - 0.640 0.734 - - - -
D11S4463 25 - - 0.760 0.691 - - - -
D12ATA63 25 - - 0.720 0.745 - - - -
D12S297 25 - - 0.800 0.778 - - - -
D12S391 total frequency: 1.002 24 - - 0.792 0.835 - - - -
D13S317 25 - - 0.840 0.770 - - - -
D14S1426 25 - - 0.880 0.801 - - - -
D14S1434 25 - - 0.720 0.682 - - - -
D15S822 25 - - 0.880 0.858 - - - -
D16S539 25 - - 0.800 0.746 - - - -
D17S1301 25 - - 0.640 0.567 - - - -
D17S974 25 - - 0.600 0.602 - - - -
D18S51 25 - - 0.800 0.797 - - - -
D19S433 25 - - 0.720 0.759 - - - -
D1S1627 21 - - 0.524 0.571 - - - -
D1S1656 23 - - 0.783 0.809 - - - -
D1S1677 25 - - 0.720 0.735 - - - -
D1S1679 25 - - 0.800 0.840 - - - -
D20S482 24 - - 0.583 0.616 - - - -
D21S102 25 - - 0.840 0.706 - - - -
D21S11 25 - - 0.760 0.867 - - - -
D21S2055 25 - - 0.880 0.898 - - - -
D22S1045 total frequency: 1.001 24 - - 0.792 0.753 - - - -
D2S1338 25 - - 0.920 0.865 - - - -
D2S1360 25 - - 0.840 0.860 - - - -
D2S1776 total frequency: 0.999 24 - - 0.833 0.734 - - - -
D2S427 25 - - 0.680 0.736 - - - -
D2S441 total frequency: 1.002 24 - - 0.708 0.731 - - - -
D3S1358 25 - - 0.520 0.718 - - - -
D3S1744 25 - - 0.800 0.790 - - - -
D3S2406 total frequency: 1.002 24 - - 0.917 0.873 - - - -
D3S3053 22 - - 0.682 0.658 - - - -
D3S4529 25 - - 0.720 0.716 - - - -
D3S4545 total frequency: 1.002 24 - - 0.792 0.786 - - - -
D4S2364 25 - - 0.680 0.506 - - - -
D4S2366 25 - - 0.720 0.756 - - - -
D4S2408 25 - - 0.800 0.724 - - - -
D5S1457 25 - - 0.800 0.774 - - - -
D5S2500 25 - - 0.760 0.819 - - - -
D5S818 25 - - 0.720 0.722 - - - -
D6S1017 total frequency: 1.001 24 - - 0.833 0.736 - - - -
D6S1027 24 - - 0.792 0.740 - - - -
D6S1043 25 - - 0.800 0.799 - - - -
D6S474 25 - - 0.680 0.651 - - - -
D7S1517 25 - - 0.920 0.850 - - - -
D7S2201 25 - - 0.600 0.642 - - - -
D7S820 25 - - 0.800 0.744 - - - -
D8S1132 25 - - 0.840 0.822 - - - -
D8S1179 25 - - 0.800 0.838 - - - -
D9S1118 25 - - 0.760 0.808 - - - -
D9S1120 25 - - 0.840 0.723 - - - -
D9S1122 25 - - 0.680 0.687 - - - -
D9S2157 25 - - 0.720 0.740 - - - -
F13A01 25 - - 0.840 0.821 - - - -
F13B 25 - - 0.640 0.633 - - - -
FESFPS 25 - - 0.600 0.753 - - - -
FGA 25 - - 0.840 0.844 - - - -
LPL 25 - - 0.600 0.649 - - - -
Penta_B 22 - - 0.864 0.835 - - - -
Penta_C 25 - - 0.840 0.745 - - - -
Penta_D 25 - - 0.640 0.775 - - - -
Penta_E 25 - - 0.840 0.894 - - - -
SE33 25 - - 0.920 0.884 - - - -
TH01 25 - - 0.720 0.777 - - - -
TPOX 25 - - 0.800 0.650 - - - -
vWA 25 - - 0.680 0.815 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
3.2 0.16
4 0.14
5 0.24 0.02 0.28 0.02 0.02
6 0.02 0.16 0.16
7 0.14 0.02 0.02 0.2 0.06 0.16 0.02 0.12 0.3
8 0.02 0.34 0.16 0.24 0.02 0.06 0.04 0.021 0.021 0.18 0.125 0.417 0.42 0.02 0.34 0.02 0.08 0.12 0.42
8.2 0.2
9 0.02 0.06 0.02 0.02 0.12 0.16 0.14 0.042 0.104 0.08 0.4 0.34 0.12 0.2 0.02 0.068 0.22 0.26 0.02 0.26 0.1
9.1 0.02
9.3 0.02 0.16
10 0.18 0.1 0.2 0.02 0.08 0.08 0.02 0.58 0.02 0.071 0.42 0.104 0.229 0.364 0.64 0.12 0.32 0.12 0.2 0.396 0.12 0.12 0.1 0.04 0.46 0.16 0.52 0.182 0.12 0.12 0.06 0.06
10.3 0.04
11 0.26 0.022 0.08 0.2 0.08 0.06 0.24 0.12 0.02 0.38 0.18 0.18 0.024 0.239 0.021 0.3 0.229 0.333 0.417 0.023 0.28 0.16 0.16 0.28 0.28 0.063 0.042 0.36 0.3 0.2 0.08 0.32 0.3 0.28 0.16 0.091 0.4 0.32 0.14 0.4
11.3 0.06 0.042 0.08
12 0.44 0.022 0.26 0.2 0.02 0.2 0.1 0.32 0.26 0.14 0.28 0.6 0.02 0.04 0.02 0.024 0.109 0.1 0.021 0.08 0.021 0.354 0.042 0.409 0.18 0.22 0.18 0.38 0.229 0.083 0.1 0.5 0.1 0.12 0.4 0.02 0.32 0.22 0.182 0.16 0.04 0.12 0.02
12.3 0.28 0.08
13 0.1 0.109 0.42 0.16 0.02 0.46 0.12 0.34 0.06 0.22 0.34 0.06 0.1 0.2 0.08 0.28 0.31 0.13 0.22 0.208 0.02 0.083 0.205 0.38 0.1 0.18 0.1 0.12 0.188 0.25 0.16 0.28 0.04 0.02 0.24 0.22 0.38 0.2 0.08 0.136 0.08 0.18 0.14
13.1 0.04
13.3 0.3 0.24
14 0.37 0.24 0.08 0.32 0.28 0.02 0.18 0.1 0.42 0.26 0.02 0.36 0.34 0.571 0.087 0.32 0.563 0.021 0.188 0.18 0.16 0.24 0.04 0.32 0.02 0.083 0.5 0.04 0.22 0.04 0.02 0.1 0.02 0.25 0.06 0.14
14.3 0.3 0.28
15 0.239 0.2 0.1 0.14 0.04 0.2 0.12 0.283 0.32 0.146 0.375 0.063 0.44 0.06 0.26 0.04 0.14 0.083 0.1 0.12 0.22 0.1 0.06 0.06 0.08
15.2 0.16
15.3 0.04 0.02
16 0.217 0.08 0.04 0.02 0.14 0.08 0.08 0.13 0.04 0.042 0.188 0.02 0.14 0.04 0.12 0.16 0.042 0.04 0.1 0.02 0.1 0.02 0.38 0.04 0.068 0.14 0.18
16.1 0.08
16.3 0.022 0.02 0.02
17 0.022 0.02 0.02 0.42 0.146 0.02 0.04 0.06 0.125 0.2 0.18 0.3 0.02 0.06 0.02 0.02 0.28 0.023 0.08 0.2 0.26
17.1 0.02
18 0.02 0.06 0.02 0.208 0.04 0.02 0.04 0.1 0.06 0.2 0.12 0.18 0.06 0.02 0.02 0.16 0.22
18.3 0.021
19 0.02 0.271 0.02 0.12 0.08 0.1 0.22 0.12 0.12 0.28 0.02 0.1 0.1
19.1 0.08
19.3 0.021 0.02
20 0.02 0.063 0.18 0.12 0.02 0.04 0.22 0.16 0.02 0.02 0.08 0.02
20.1 0.02
20.3 0.04
21 0.125 0.06 0.2 0.2 0.12 0.14 0.02
21.3 0.16
22 0.063 0.14 0.08 0.18 0.02 0.14 0.24
22.2 0.02
22.3 0.1
23 0.042 0.18 0.18 0.1 0.16 0.08 0.16
23.3 0.1
24 0.021 0.02 0.24 0.02 0.14 0.12 0.1 0.02 0.18
24.2 0.04
24.3 0.02
25 0.021 0.08 0.16 0.04 0.16 0.08 0.12
25.2 0.04 0.12
26 0.12 0.02 0.08 0.042 0.06 0.06
26.2 0.04
27 0.04 0.08 0.1 0.25 0.02
27.2 0.04
28 0.12 0.02 0.042
28.2 0.02
29 0.12 0.02 0.021
29.2 0.02
30 0.2 0.02 0.02 0.063
30.2 0.08 0.1
30.3 0.146
31 0.06 0.08 0.021
31.2 0.1 0.06
31.3 0.313
32 0.12 0.042
32.2 0.2
32.3 0.167
33 0.08 0.104
33.2 0.04
33.3 0.021
34 0.12 0.125
34.2 0.02
35 0.167
36 0.146
37 0.167
38 0.125
39 0.042

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