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pop.STR: Pakistan - Pathan

Study statistics

Loci
70 Autosomal STRs
Allele type
Length-based alleles
Sample size
up to 24

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Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
License
Public domain
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

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Normalized frequencies
🔴 Failed

This check verifies that allele frequencies for each locus add up to 1 within a specified tolerance.

Ran with tolerance = 0.001. Max. deviation from 1: 0.0040 at SE33.

Misspelled locus names
🟢 Passed

Looks for common misspellings such as changing thee number 0 for the letter O.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 24 - - 0.750 0.692 - - - -
D10S1248 24 - - 0.875 0.761 - - - -
D10S1435 total frequency: 1.001 24 - - 0.750 0.767 - - - -
D10S2325 total frequency: 1.001 24 - - 0.958 0.863 - - - -
D11S1304 24 - - 0.625 0.720 - - - -
D11S4463 24 - - 0.750 0.795 - - - -
D12ATA63 24 - - 0.833 0.760 - - - -
D12S297 total frequency: 1.002 24 - - 0.708 0.800 - - - -
D12S391 24 - - 0.750 0.868 - - - -
D13S317 24 - - 0.792 0.749 - - - -
D14S1426 23 - - 0.652 0.773 - - - -
D14S1434 24 - - 0.500 0.637 - - - -
D15S822 19 - - 0.737 0.881 - - - -
D16S539 24 - - 0.875 0.776 - - - -
D17S1301 total frequency: 1.001 24 - - 0.583 0.655 - - - -
D17S974 24 - - 0.542 0.637 - - - -
D18S51 total frequency: 1.001 24 - - 0.792 0.816 - - - -
D19S433 24 - - 0.750 0.797 - - - -
D1S1627 21 - - 0.619 0.737 - - - -
D1S1656 total frequency: 1.002 24 - - 0.917 0.865 - - - -
D1S1677 24 - - 0.500 0.727 - - - -
D1S1679 total frequency: 1.001 24 - - 0.625 0.814 - - - -
D20S482 20 - - 0.700 0.726 - - - -
D21S102 24 - - 0.583 0.668 - - - -
D21S11 total frequency: 1.001 24 - - 0.667 0.808 - - - -
D21S2055 total frequency: 1.003 24 - - 0.833 0.912 - - - -
D22S1045 24 - - 0.750 0.734 - - - -
D2S1338 total frequency: 1.002 24 - - 0.917 0.865 - - - -
D2S1360 total frequency: 1.002 24 - - 0.792 0.865 - - - -
D2S1776 22 - - 0.864 0.719 - - - -
D2S427 24 - - 0.792 0.735 - - - -
D2S441 24 - - 0.750 0.700 - - - -
D3S1358 total frequency: 1.001 24 - - 0.792 0.666 - - - -
D3S1744 total frequency: 1.002 24 - - 0.750 0.840 - - - -
D3S2406 total frequency: 0.999 23 - - 0.957 0.886 - - - -
D3S3053 total frequency: 0.999 24 - - 0.583 0.708 - - - -
D3S4529 24 - - 0.875 0.755 - - - -
D3S4545 24 - - 0.792 0.837 - - - -
D4S2364 23 - - 0.478 0.553 - - - -
D4S2366 24 - - 0.708 0.793 - - - -
D4S2408 24 - - 0.708 0.720 - - - -
D5S1457 24 - - 0.833 0.766 - - - -
D5S2500 24 - - 0.792 0.790 - - - -
D5S818 24 - - 0.792 0.743 - - - -
D6S1017 23 - - 0.739 0.680 - - - -
D6S1027 total frequency: 1.002 24 - - 0.750 0.777 - - - -
D6S1043 24 - - 0.667 0.805 - - - -
D6S474 total frequency: 1.001 24 - - 0.833 0.736 - - - -
D7S1517 total frequency: 1.001 24 - - 0.833 0.854 - - - -
D7S2201 24 - - 0.750 0.632 - - - -
D7S820 total frequency: 1.002 24 - - 0.667 0.789 - - - -
D8S1132 24 - - 0.708 0.847 - - - -
D8S1179 total frequency: 1.002 24 - - 0.792 0.828 - - - -
D9S1118 20 - - 0.700 0.714 - - - -
D9S1120 24 - - 0.625 0.774 - - - -
D9S1122 total frequency: 1.002 24 - - 0.667 0.717 - - - -
D9S2157 22 - - 0.682 0.806 - - - -
F13A01 24 - - 0.708 0.786 - - - -
F13B 24 - - 0.750 0.692 - - - -
FESFPS 24 - - 0.792 0.712 - - - -
FGA 24 - - 0.875 0.787 - - - -
LPL total frequency: 1.001 24 - - 0.792 0.655 - - - -
Penta_B total frequency: 0.998 23 - - 0.652 0.836 - - - -
Penta_C total frequency: 1.001 24 - - 0.792 0.798 - - - -
Penta_D 24 - - 0.875 0.776 - - - -
Penta_E 24 - - 0.792 0.891 - - - -
SE33 total frequency: 1.004 24 - - 0.958 0.924 - - - -
TH01 total frequency: 1.001 24 - - 0.708 0.783 - - - -
TPOX 24 - - 0.792 0.622 - - - -
vWA 24 - - 0.875 0.800 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
3.2 0.229
4 0.104
5 0.229 0.292 0.021 0.063
6 0.021 0.208 0.146 0.188
7 0.021 0.146 0.021 0.021 0.475 0.045 0.146 0.104 0.104
8 0.458 0.146 0.283 0.063 0.063 0.068 0.354 0.087 0.313 0.188 0.021 0.125 0.021 0.021 0.021 0.25 0.458
8.1 0.021
8.2 0.146
9 0.125 0.021 0.042 0.13 0.125 0.333 0.021 0.104 0.021 0.196 0.313 0.146 0.104 0.146 0.068 0.313 0.043 0.271 0.375 0.188 0.021
9.3 0.271
10 0.396 0.083 0.125 0.021 0.042 0.043 0.146 0.125 0.063 0.479 0.119 0.042 0.021 0.438 0.021 0.25 0.354 0.229 0.609 0.083 0.333 0.021 0.104 0.146 0.457 0.042 0.125 0.188 0.063 0.063 0.023 0.417 0.188 0.458 0.217 0.083 0.146 0.042 0.104
10.3 0.05
11 0.292 0.188 0.167 0.104 0.021 0.292 0.022 0.021 0.354 0.271 0.146 0.021 0.095 0.229 0.05 0.354 0.333 0.205 0.396 0.104 0.196 0.104 0.146 0.375 0.271 0.065 0.104 0.354 0.375 0.313 0.021 0.292 0.136 0.396 0.313 0.217 0.313 0.104 0.146 0.396
11.3 0.022 0.083 0.05
12 0.25 0.021 0.375 0.167 0.104 0.229 0.063 0.354 0.217 0.021 0.229 0.5 0.021 0.125 0.063 0.048 0.125 0.05 0.021 0.409 0.083 0.458 0.042 0.167 0.021 0.146 0.146 0.375 0.304 0.083 0.208 0.458 0.146 0.104 0.025 0.083 0.396 0.023 0.292 0.188 0.152 0.104 0.146 0.125 0.021
12.1 0.021
12.3 0.313
13 0.063 0.146 0.146 0.146 0.313 0.167 0.25 0.125 0.283 0.333 0.105 0.104 0.125 0.229 0.208 0.262 0.063 0.167 0.275 0.063 0.068 0.021 0.104 0.354 0.229 0.354 0.083 0.104 0.087 0.313 0.083 0.229 0.042 0.25 0.188 0.318 0.104 0.042 0.174 0.083 0.167 0.146 0.042
13.1 0.021
13.3 0.354 0.15
14 0.229 0.167 0.083 0.125 0.208 0.271 0.479 0.079 0.042 0.271 0.354 0.405 0.104 0.333 0.4 0.083 0.083 0.042 0.125 0.083 0.229 0.104 0.25 0.083 0.063 0.063 0.396 0.229 0.104 0.042 0.182 0.087 0.042 0.042 0.083 0.083 0.146
14.1 0.042
14.2 0.042
14.3 0.167 0.175
15 0.333 0.021 0.188 0.188 0.104 0.167 0.125 0.071 0.167 0.354 0.175 0.333 0.063 0.5 0.063 0.208 0.146 0.042 0.021 0.125 0.188 0.188 0.021 0.182 0.021 0.065 0.063 0.063 0.083
15.2 0.083 0.025
15.3 0.083 0.025
16 0.229 0.104 0.083 0.042 0.158 0.104 0.063 0.125 0.083 0.05 0.188 0.042 0.25 0.167 0.146 0.042 0.063 0.188 0.063 0.354 0.023 0.043 0.125 0.063 0.167
16.1 0.125
16.2 0.042
16.3 0.021 0.025
17 0.021 0.083 0.375 0.146 0.105 0.042 0.021 0.042 0.042 0.042 0.063 0.125 0.229 0.021 0.021 0.021 0.042 0.063 0.021 0.083 0.021 0.208 0.083 0.167 0.313
17.1 0.021
17.3 0.021
18 0.021 0.021 0.083 0.021 0.083 0.026 0.042 0.063 0.229 0.063 0.167 0.083 0.021 0.208 0.042 0.063 0.021 0.188
18.1 0.021
18.2 0.021
19 0.021 0.063 0.229 0.25 0.146 0.021 0.167 0.063 0.229 0.146 0.021 0.083 0.104
19.1 0.125
19.3 0.053
20 0.042 0.083 0.042 0.125 0.042 0.063 0.021 0.063 0.083 0.021 0.021
20.3 0.158
21 0.021 0.146 0.083 0.063 0.188 0.021 0.021 0.146 0.188 0.271 0.063
21.3 0.158
22 0.083 0.229 0.104 0.146 0.146 0.167 0.104
22.2 0.021
22.3 0.021 0.079
23 0.104 0.229 0.042 0.146 0.167 0.104 0.208
23.3 0.079 0.021
24 0.063 0.042 0.042 0.146 0.021 0.083 0.021 0.271
24.2 0.063
25 0.021 0.063 0.125 0.042 0.125 0.042 0.104 0.104
25.2 0.021 0.063
26 0.125 0.083 0.063
26.2 0.083
27 0.167 0.146 0.021
27.2 0.021
28 0.271 0.042 0.063 0.022 0.063
28.2 0.063
29 0.125 0.021 0.021
29.2 0.021 0.021
30 0.229 0.042 0.043
30.2 0.042 0.042
30.3 0.104
31 0.021 0.083 0.043
31.1 0.021
31.2 0.208
31.3 0.25
32 0.042 0.087
32.2 0.021 0.021
32.3 0.208
33 0.063 0.152
33.2 0.063
33.3 0.125
34 0.042 0.196
35 0.021 0.087
36 0.063 0.022
37 0.13
38 0.043
39 0.109
40 0.043
42 0.022

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