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pop.STR: Senegal - Mandenka

Study statistics

Loci
70 Autosomal STRs
Allele type
Length-based alleles
Sample size
up to 22

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Caution! Some automated checks did not pass for this study.

Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
License
Public domain
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

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Normalized frequencies
🔴 Failed

This check verifies that allele frequencies for each locus add up to 1 within a specified tolerance.

Ran with tolerance = 0.001. Max. deviation from 1: 0.0020 at D11S1304.

Misspelled locus names
🟢 Passed

Looks for common misspellings such as changing thee number 0 for the letter O.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO total frequency: 0.999 21 - - 0.952 0.755 - - - -
D10S1248 total frequency: 1.001 21 - - 0.667 0.747 - - - -
D10S1435 22 - - 0.682 0.731 - - - -
D10S2325 22 - - 0.909 0.841 - - - -
D11S1304 total frequency: 1.002 22 - - 0.818 0.853 - - - -
D11S4463 22 - - 0.818 0.756 - - - -
D12ATA63 total frequency: 1.001 22 - - 0.818 0.763 - - - -
D12S297 22 - - 0.727 0.696 - - - -
D12S391 21 - - 0.857 0.800 - - - -
D13S317 21 - - 0.762 0.688 - - - -
D14S1426 22 - - 0.591 0.746 - - - -
D14S1434 21 - - 0.810 0.709 - - - -
D15S822 19 - - 0.895 0.873 - - - -
D16S539 20 - - 0.950 0.746 - - - -
D17S1301 total frequency: 1.001 21 - - 0.571 0.512 - - - -
D17S974 22 - - 0.636 0.772 - - - -
D18S51 19 - - 0.842 0.860 - - - -
D19S433 total frequency: 1.002 21 - - 0.810 0.773 - - - -
D1S1627 22 - - 0.818 0.757 - - - -
D1S1656 21 - - 0.714 0.817 - - - -
D1S1677 total frequency: 1.001 21 - - 0.810 0.745 - - - -
D1S1679 21 - - 0.810 0.838 - - - -
D20S482 20 - - 0.750 0.671 - - - -
D21S102 total frequency: 0.999 22 - - 0.818 0.764 - - - -
D21S11 total frequency: 0.999 21 - - 0.810 0.844 - - - -
D21S2055 22 - - 0.818 0.876 - - - -
D22S1045 21 - - 0.571 0.769 - - - -
D2S1338 total frequency: 0.999 21 - - 0.952 0.878 - - - -
D2S1360 total frequency: 1.002 22 - - 0.864 0.813 - - - -
D2S1776 18 - - 0.722 0.725 - - - -
D2S427 21 - - 0.667 0.717 - - - -
D2S441 21 - - 0.810 0.741 - - - -
D3S1358 21 - - 0.810 0.730 - - - -
D3S1744 22 - - 0.727 0.763 - - - -
D3S2406 total frequency: 0.998 22 - - 0.864 0.876 - - - -
D3S3053 18 - - 0.667 0.613 - - - -
D3S4529 22 - - 0.591 0.726 - - - -
D3S4545 22 - - 0.955 0.883 - - - -
D4S2364 22 - - 0.409 0.346 - - - -
D4S2366 22 - - 0.591 0.719 - - - -
D4S2408 22 - - 0.727 0.696 - - - -
D5S1457 22 - - 0.818 0.738 - - - -
D5S2500 22 - - 0.818 0.835 - - - -
D5S818 21 - - 0.810 0.755 - - - -
D6S1017 total frequency: 1.001 22 - - 0.909 0.815 - - - -
D6S1027 total frequency: 0.998 22 - - 0.773 0.776 - - - -
D6S1043 total frequency: 1.002 22 - - 0.818 0.862 - - - -
D6S474 22 - - 0.682 0.769 - - - -
D7S1517 22 - - 0.864 0.854 - - - -
D7S2201 22 - - 0.727 0.686 - - - -
D7S820 21 - - 0.667 0.754 - - - -
D8S1132 total frequency: 0.999 22 - - 0.955 0.871 - - - -
D8S1179 21 - - 0.714 0.786 - - - -
D9S1118 total frequency: 1.002 22 - - 0.818 0.855 - - - -
D9S1120 22 - - 0.864 0.739 - - - -
D9S1122 22 - - 0.636 0.667 - - - -
D9S2157 total frequency: 0.999 22 - - 0.864 0.834 - - - -
F13A01 22 - - 0.955 0.803 - - - -
F13B 22 - - 0.682 0.617 - - - -
FESFPS 21 - - 0.762 0.745 - - - -
FGA 20 - - 0.900 0.823 - - - -
LPL 22 - - 0.727 0.731 - - - -
Penta_B total frequency: 0.998 22 - - 0.818 0.860 - - - -
Penta_C 22 - - 0.727 0.719 - - - -
Penta_D total frequency: 1.002 22 - - 0.909 0.850 - - - -
Penta_E total frequency: 0.999 22 - - 0.818 0.889 - - - -
SE33 total frequency: 1.002 22 - - 1.000 0.913 - - - -
TH01 21 - - 0.667 0.752 - - - -
TPOX 21 - - 0.952 0.808 - - - -
vWA 21 - - 0.762 0.817 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
2.2 0.273
3.2 0.091
4 0.136
5 0.5 0.429 0.341 0.045 0.136 0.045
6 0.136 0.182 0.024 0.159 0.568 0.071 0.143
7 0.119 0.182 0.023 0.091 0.182 0.045 0.048 0.114 0.136 0.159 0.182 0.024 0.114 0.023 0.023 0.31 0.048
8 0.214 0.023 0.205 0.048 0.023 0.091 0.114 0.071 0.273 0.182 0.023 0.262 0.023 0.045 0.091 0.119 0.068 0.091 0.136 0.31 0.19
8.2 0.295
9 0.024 0.114 0.205 0.045 0.2 0.205 0.114 0.111 0.114 0.114 0.114 0.023 0.136 0.159 0.023 0.071 0.023 0.136 0.024 0.114 0.227 0.205 0.023 0.091 0.214 0.262
9.3 0.071
10 0.071 0.182 0.023 0.023 0.023 0.262 0.125 0.227 0.024 0.159 0.024 0.025 0.386 0.024 0.028 0.024 0.194 0.795 0.432 0.205 0.023 0.182 0.071 0.182 0.386 0.25 0.333 0.024 0.045 0.091 0.023 0.238 0.341 0.136 0.023 0.114 0.136 0.024 0.19
10.2 0.023
10.3 0.024 0.136
11 0.262 0.024 0.091 0.205 0.023 0.045 0.381 0.045 0.4 0.143 0.341 0.026 0.048 0.136 0.024 0.025 0.205 0.119 0.361 0.405 0.194 0.091 0.159 0.477 0.227 0.286 0.045 0.205 0.386 0.238 0.071 0.159 0.273 0.405 0.068 0.136 0.409 0.091 0.023 0.167 0.024
11.1 0.045
11.2 0.068 0.023
11.3 0.024 0.095 0.114
12 0.333 0.119 0.364 0.136 0.091 0.114 0.045 0.357 0.205 0.095 0.053 0.15 0.667 0.045 0.119 0.091 0.048 0.024 0.05 0.159 0.048 0.306 0.071 0.556 0.023 0.227 0.091 0.295 0.114 0.31 0.114 0.159 0.023 0.318 0.048 0.167 0.5 0.182 0.119 0.341 0.068 0.25 0.114 0.091
12.1 0.045
12.2 0.024
12.3 0.262 0.114
13 0.119 0.273 0.023 0.023 0.318 0.114 0.182 0.19 0.364 0.262 0.125 0.143 0.079 0.381 0.273 0.214 0.167 0.25 0.045 0.194 0.095 0.056 0.045 0.273 0.068 0.238 0.114 0.091 0.114 0.364 0.119 0.227 0.045 0.023 0.071 0.136 0.159 0.091 0.114 0.182 0.023
13.2 0.053 0.048
13.3 0.095 0.205
14 0.405 0.227 0.114 0.295 0.205 0.114 0.024 0.273 0.381 0.184 0.048 0.053 0.238 0.341 0.286 0.214 0.5 0.071 0.262 0.119 0.023 0.182 0.114 0.045 0.024 0.045 0.023 0.182 0.381 0.159 0.068 0.045 0.023 0.091 0.023 0.143
14.2 0.048
14.3 0.143 0.205
15 0.238 0.068 0.205 0.386 0.045 0.095 0.158 0.024 0.119 0.405 0.1 0.238 0.048 0.405 0.159 0.318 0.227 0.091 0.136 0.045 0.119 0.182 0.023 0.045 0.023 0.023 0.045 0.045 0.119
15.2 0.048
15.3 0.024 0.023
16 0.048 0.045 0.068 0.136 0.023 0.048 0.158 0.184 0.167 0.119 0.048 0.05 0.071 0.024 0.262 0.182 0.364 0.091 0.045 0.023 0.205 0.159 0.071 0.409 0.023 0.159 0.023 0.091 0.091 0.31
16.1 0.068
16.3 0.095 0.023
17 0.024 0.045 0.091 0.023 0.023 0.238 0.105 0.237 0.024 0.048 0.381 0.024 0.095 0.318 0.068 0.023 0.114 0.068 0.159 0.048 0.182 0.045 0.045 0.091 0.119
18 0.023 0.023 0.31 0.053 0.053 0.048 0.048 0.095 0.119 0.273 0.182 0.023 0.023 0.114 0.045 0.114 0.167
18.1 0.048
18.3 0.024
19 0.167 0.026 0.079 0.024 0.19 0.023 0.045 0.023 0.159 0.091 0.023 0.025 0.159 0.095
19.3 0.053
20 0.023 0.071 0.026 0.071 0.024 0.023 0.045 0.114 0.159 0.025 0.091
20.3 0.184
21 0.048 0.053 0.095 0.095 0.114 0.023 0.114 0.159 0.1 0.023 0.024
21.3 0.105
22 0.286 0.119 0.273 0.023 0.182 0.045 0.3
22.2 0.045
22.3 0.053
23 0.19 0.119 0.227 0.045 0.182 0.045 0.2
23.2 0.114
23.3 0.026
24 0.143 0.167 0.114 0.045 0.023 0.05
24.2 0.023
25 0.048 0.023 0.071 0.182 0.023 0.159 0.15
26 0.071 0.023 0.114 0.1
26.2 0.045
27 0.024 0.205 0.025 0.023
27.2 0.023
28 0.214 0.045 0.023 0.023
29 0.214 0.114 0.023 0.023
29.3 0.045
30 0.19 0.045 0.136 0.025
30.2 0.023
30.3 0.091
31 0.119 0.159 0.136
31.2 0.024
31.3 0.182
32 0.114 0.045
32.2 0.071
32.3 0.068
33 0.205 0.091
33.2 0.048
33.3 0.068
34 0.091 0.159
34.1 0.024
34.3 0.068
35 0.071 0.114 0.068
35.3 0.023
36 0.136
37 0.159
38 0.045
39 0.023
40 0.023

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