👩‍🔬 leapdna

← Back to Explore

pop.STR: South Africa - Bantu

Study statistics

Loci
70 Autosomal STRs
Allele type
Length-based alleles
Sample size
up to 8
Location
South Africa
More studies with this location

Download

Caution! Some automated checks did not pass for this study.

Bibliographic information

Date published
2009
Title
Pop.STR—An Online Population Frequency Browser for Established and New Forensic STRs
Authors
Jorge Amigo, Christopher Phillips, Toño Salas, Luís Fernandez Formoso, Ángel Carracedo, and Maviky Lareu
Journal
Forensic Science International: Genetics Supplement Series
License
Public domain
Abstract

We recently produced allele frequency data for 20 forensic STRs in more than 50 worldwide populations. The STRs characterized include 5 new European Standard Set (ESS) STRs where novel low frequency and intermediate-repeat genotypes found were confirmed by sequence analysis. Data for the 20 STRs has been collated into an open-access online frequency browser at: http://spsmart.cesga.es/popstr.php that allows users to combine populations into groups to generate re-calculated allele frequency estimates from the merged genotype data. The flexibility to combine populations in this way and the graphical summaries provided for each marker's allele frequencies offers the forensic analyst an informative system to consult STR variability in a global range of populations.

leapdna checks

New! Learn more about automated checks

Normalized frequencies
🔴 Failed

This check verifies that allele frequencies for each locus add up to 1 within a specified tolerance.

Ran with tolerance = 0.001. Max. deviation from 1: 0.0040 at Penta_E.

Misspelled locus names
🟢 Passed

Looks for common misspellings such as changing thee number 0 for the letter O.

Forensic parameters

Forensic parameters for each locus as reported by the authors.
Locus # MP PI Hobs Hexp PIC PD PE HWE
CSF1PO 8 - - 1.000 0.711 - - - -
D10S1248 total frequency: 1.002 8 - - 0.875 0.797 - - - -
D10S1435 8 - - 0.625 0.648 - - - -
D10S2325 total frequency: 1.002 8 - - 1.000 0.813 - - - -
D11S1304 total frequency: 1.003 8 - - 0.875 0.820 - - - -
D11S4463 total frequency: 1.002 8 - - 1.000 0.734 - - - -
D12ATA63 total frequency: 1.002 8 - - 0.750 0.719 - - - -
D12S297 8 - - 0.875 0.664 - - - -
D12S391 total frequency: 1.003 8 - - 1.000 0.852 - - - -
D13S317 8 - - 0.625 0.680 - - - -
D14S1426 8 - - 0.750 0.711 - - - -
D14S1434 8 - - 0.625 0.633 - - - -
D15S822 8 - - 0.750 0.695 - - - -
D16S539 8 - - 0.625 0.742 - - - -
D17S1301 8 - - 0.625 0.680 - - - -
D17S974 8 - - 0.875 0.758 - - - -
D18S51 total frequency: 1.002 8 - - 0.875 0.719 - - - -
D19S433 total frequency: 1.003 8 - - 0.750 0.773 - - - -
D1S1627 8 - - 0.500 0.727 - - - -
D1S1656 total frequency: 1.003 8 - - 1.000 0.852 - - - -
D1S1677 7 - - 0.429 0.684 - - - -
D1S1679 total frequency: 1.003 8 - - 0.750 0.820 - - - -
D20S482 8 - - 0.875 0.695 - - - -
D21S102 total frequency: 1.002 8 - - 0.875 0.766 - - - -
D21S11 total frequency: 1.002 8 - - 1.000 0.828 - - - -
D21S2055 8 - - 0.875 0.789 - - - -
D22S1045 8 - - 0.875 0.773 - - - -
D2S1338 total frequency: 1.003 8 - - 1.000 0.836 - - - -
D2S1360 total frequency: 1.003 8 - - 1.000 0.805 - - - -
D2S1776 8 - - 0.750 0.773 - - - -
D2S427 7 - - 0.857 0.765 - - - -
D2S441 8 - - 0.750 0.555 - - - -
D3S1358 8 - - 0.750 0.633 - - - -
D3S1744 8 - - 0.750 0.648 - - - -
D3S2406 total frequency: 1.002 8 - - 1.000 0.875 - - - -
D3S3053 8 - - 0.875 0.727 - - - -
D3S4529 total frequency: 1.002 8 - - 1.000 0.734 - - - -
D3S4545 total frequency: 1.003 8 - - 0.750 0.883 - - - -
D4S2364 8 - - 0.250 0.219 - - - -
D4S2366 total frequency: 1.002 8 - - 1.000 0.813 - - - -
D4S2408 8 - - 0.750 0.742 - - - -
D5S1457 total frequency: 1.002 8 - - 0.875 0.750 - - - -
D5S2500 total frequency: 1.003 8 - - 0.750 0.820 - - - -
D5S818 total frequency: 1.002 8 - - 1.000 0.813 - - - -
D6S1017 8 - - 0.625 0.680 - - - -
D6S1027 8 - - 0.875 0.805 - - - -
D6S1043 total frequency: 1.003 8 - - 0.750 0.758 - - - -
D6S474 total frequency: 1.002 8 - - 0.625 0.734 - - - -
D7S1517 total frequency: 1.003 8 - - 1.000 0.883 - - - -
D7S2201 total frequency: 1.002 8 - - 0.875 0.750 - - - -
D7S820 8 - - 1.000 0.781 - - - -
D8S1132 total frequency: 1.003 8 - - 0.875 0.805 - - - -
D8S1179 8 - - 0.875 0.758 - - - -
D9S1118 total frequency: 1.002 8 - - 0.500 0.797 - - - -
D9S1120 8 - - 0.875 0.758 - - - -
D9S1122 8 - - 0.375 0.492 - - - -
D9S2157 total frequency: 1.003 8 - - 0.750 0.773 - - - -
F13A01 8 - - 0.875 0.758 - - - -
F13B 8 - - 0.500 0.727 - - - -
FESFPS 8 - - 0.625 0.664 - - - -
FGA total frequency: 1.002 8 - - 1.000 0.828 - - - -
LPL total frequency: 1.002 8 - - 0.875 0.766 - - - -
Penta_B total frequency: 1.002 8 - - 0.875 0.828 - - - -
Penta_C total frequency: 1.003 8 - - 1.000 0.805 - - - -
Penta_D total frequency: 1.002 8 - - 0.625 0.828 - - - -
Penta_E total frequency: 1.004 8 - - 1.000 0.859 - - - -
SE33 total frequency: 1.004 8 - - 1.000 0.891 - - - -
TH01 total frequency: 1.002 8 - - 0.750 0.734 - - - -
TPOX 8 - - 0.750 0.695 - - - -
vWA total frequency: 1.002 8 - - 0.625 0.734 - - - -

Allele frequencies

CSF1PO D10S1248 D10S1435 D10S2325 D11S1304 D11S4463 D12ATA63 D12S297 D12S391 D13S317 D14S1426 D14S1434 D15S822 D16S539 D17S1301 D17S974 D18S51 D19S433 D1S1627 D1S1656 D1S1677 D1S1679 D20S482 D21S102 D21S11 D21S2055 D22S1045 D2S1338 D2S1360 D2S1776 D2S427 D2S441 D3S1358 D3S1744 D3S2406 D3S3053 D3S4529 D3S4545 D4S2364 D4S2366 D4S2408 D5S1457 D5S2500 D5S818 D6S1017 D6S1027 D6S1043 D6S474 D7S1517 D7S2201 D7S820 D8S1132 D8S1179 D9S1118 D9S1120 D9S1122 D9S2157 F13A01 F13B FESFPS FGA LPL Penta_B Penta_C Penta_D Penta_E SE33 TH01 TPOX vWA
2.2 0.25
3.2 0.125
4 0.063
5 0.5 0.286 0.375 0.125 0.125 0.063 0.188
6 0.313 0.063 0.25 0.125
7 0.125 0.063 0.063 0.438 0.25 0.125 0.188 0.188 0.063 0.063 0.188
8 0.063 0.125 0.125 0.063 0.25 0.188 0.063 0.313 0.125 0.125 0.25 0.188 0.25 0.375 0.063 0.063 0.125 0.188 0.438 0.25
8.2 0.188
9 0.188 0.063 0.25 0.125 0.25 0.188 0.125 0.188 0.063 0.063 0.125 0.25 0.125 0.063 0.188 0.125 0.125 0.313 0.125 0.125 0.125
9.3 0.063
10 0.25 0.25 0.188 0.313 0.125 0.125 0.063 0.063 0.063 0.25 0.125 0.188 0.313 0.875 0.25 0.25 0.063 0.063 0.125 0.125 0.125 0.188 0.25 0.188 0.063 0.313 0.313 0.063 0.188 0.063 0.063 0.188
10.1 0.063
11 0.125 0.063 0.125 0.25 0.063 0.063 0.375 0.125 0.125 0.125 0.313 0.125 0.125 0.188 0.313 0.125 0.25 0.625 0.125 0.125 0.188 0.375 0.063 0.063 0.188 0.063 0.313 0.25 0.375 0.25 0.063 0.125 0.063 0.188 0.063 0.438
11.2 0.063
11.3 0.143 0.063 0.063
12 0.438 0.125 0.438 0.063 0.125 0.375 0.375 0.125 0.438 0.438 0.063 0.125 0.125 0.071 0.063 0.313 0.313 0.188 0.125 0.125 0.063 0.063 0.25 0.438 0.063 0.313 0.125 0.063 0.563 0.063 0.5 0.25 0.063 0.25
12.3 0.286 0.125
13 0.188 0.375 0.063 0.313 0.063 0.063 0.188 0.438 0.063 0.125 0.313 0.313 0.313 0.063 0.214 0.25 0.188 0.125 0.125 0.25 0.188 0.25 0.125 0.25 0.188 0.063 0.125 0.063 0.125 0.438 0.063 0.125 0.063 0.25 0.063 0.063 0.188
13.2 0.063
13.3 0.071 0.188
14 0.188 0.063 0.063 0.125 0.375 0.188 0.25 0.063 0.125 0.5 0.5 0.125 0.313 0.375 0.125 0.286 0.375 0.188 0.313 0.375 0.313 0.063 0.063 0.063 0.438 0.25 0.063 0.063 0.125 0.063 0.063 0.063
14.2 0.063
14.3 0.063 0.214 0.313
15 0.125 0.063 0.063 0.313 0.125 0.188 0.188 0.063 0.429 0.313 0.375 0.375 0.063 0.188 0.188 0.188 0.063 0.25 0.313 0.063 0.063 0.375
15.2 0.063 0.125
16 0.313 0.063 0.063 0.063 0.063 0.25 0.063 0.063 0.125 0.188 0.438 0.313 0.125 0.125 0.125 0.125 0.313 0.25 0.063 0.125 0.063 0.313
17 0.063 0.125 0.438 0.188 0.063 0.188 0.375 0.063 0.375 0.25 0.063
17.3 0.063
18 0.188 0.188 0.063 0.438 0.063 0.063 0.063 0.125 0.125 0.063 0.125
18.1 0.063
19 0.188 0.125 0.063 0.125 0.125 0.063 0.063 0.125 0.063
19.3 0.063
20 0.063 0.063 0.188 0.188 0.188 0.063 0.063 0.188
21 0.125 0.125 0.063 0.063 0.063 0.063
21.3 0.125
22 0.125 0.25 0.188 0.125 0.125 0.063 0.125
22.3 0.125
23 0.313 0.125 0.125 0.063 0.25
23.2 0.063
23.3 0.125
24 0.063 0.125 0.188 0.063 0.063 0.063 0.125
25 0.063 0.313 0.125 0.25
25.1 0.063
25.2 0.063
26 0.063 0.063 0.063 0.063 0.125 0.125
27 0.063 0.188 0.063 0.063
27.2 0.063
28 0.188 0.063
28.2 0.063
29 0.25 0.063
29.3 0.125
30 0.125 0.125 0.063 0.063
30.3 0.063
31 0.188 0.125 0.125 0.063
31.2 0.063
31.3 0.063
32 0.375 0.188
32.3 0.125
33 0.125 0.125 0.125
33.2 0.063
34 0.125 0.125
35 0.125 0.125
36 0.063
37 0.125
42 0.063

Download CSV or select another format